PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100084110081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 25035.4 Da PI: 8.8403 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 103.6 | 1.7e-32 | 9 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 aCa+Ck++r+kC+++C+lap fp e++++f++vhk+FG+snv+k+++ l+ee+r+ a++sl++eA +r++dPv G +g ++ Ote100084110081|100084110081 9 ACASCKHQRKKCTEKCMLAPFFPVERTREFQAVHKVFGVSNVTKIITGLREEDRKVAVDSLIWEALCRQKDPVLGPFGDYR 89 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallk 98 ++ ++l+ k++ ++ + Ote100084110081|100084110081 90 RVCEELRLYKTQYQHFQ 106 ******99999887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.15 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-31 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MQRTNNTTAC ASCKHQRKKC TEKCMLAPFF PVERTREFQA VHKVFGVSNV TKIITGLREE 60 DRKVAVDSLI WEALCRQKDP VLGPFGDYRR VCEELRLYKT QYQHFQQVPN QVYKAAATQG 120 LMGWNNNKVM NKTSVTSSTF IGNGNSVMEF CTYDYSPNLH INQDSEKQRI ERENGSAIKP 180 IILPQQHLPN GFGQQYILAG QYNPLDTKSM ESTLWEGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-19 | 10 | 86 | 12 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-19 | 10 | 86 | 12 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098374.1 | 1e-106 | LOB domain-containing protein 2 | ||||
Swissprot | Q9LNB9 | 2e-45 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | A0A4D8XQK5 | 1e-119 | A0A4D8XQK5_SALSN; Uncharacterized protein | ||||
STRING | Migut.H02160.1.p | 3e-83 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10177 | 18 | 27 |