PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100084010011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 391aa MW: 45278.9 Da PI: 6.8797

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100084010011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94	1.5e-29	63	148	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rW++qe+l+L+++r++++++++++++k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk+keg+ +r ++ ++++ Ote100084010011\|100084010011 63 RWPRQETLTLLQIRSRLDHKFKEANQKGPLWDEVSRIMsEENGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYR 141 8***********************************8899************************98..55667 PP trihelix 81 yfdqlea 87 +f+qlea Ote100084010011\|100084010011 142 FFRQLEA 148 *****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	2.46E-20	62	128	No hit	No description
Pfam	PF13837	3.4E-20	63	149	No hit	No description
PROSITE profile	PS50090	6.702	63	121	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0010200	Biological Process	response to chitin
GO:0046621	Biological Process	negative regulation of organ growth
GO:0048442	Biological Process	sepal development
GO:0048498	Biological Process	establishment of petal orientation
GO:0090428	Biological Process	perianth development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MEDQYGMADL RQYLDGHPFF PAVSQPPDLL TSSHPYDTLV FPSDSVPVGL GGFEVEPAGG 60 LRRWPRQETL TLLQIRSRLD HKFKEANQKG PLWDEVSRIM SEENGYQRSG KKCREKFENL 120 YKYYKKTKEG KAGRQDGKHY RFFRQLEALY GETSNAVPHF HCGNFTNTLV SDQEASALDS 180 CDYDTTSSYC SDSNIRLLDI ITDKNNPIEK KRRVKRSLKA KIEASIDEHM KSMMEKQEAW 240 MEKMTMVIES KERERLMREE QWRKQDATRI EREQEMWASE RAWIEARDAA LMEAFNKLAG 300 KGPDPKQASM NGMDLRFEEN GSRGKWDQII NDYLMKCSKK RRESSKSSYS YPILDNQTAG 360 VEGAMKLNGY GNEAINDGLF SFFEGDSYQR L

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MEDQYGMADL RQYLDGHPFF PAVSQPPDLL TSSHPYDTLV FPSDSVPVGL GGFEVEPAGG  60
LRRWPRQETL TLLQIRSRLD HKFKEANQKG PLWDEVSRIM SEENGYQRSG KKCREKFENL  120
YKYYKKTKEG KAGRQDGKHY RFFRQLEALY GETSNAVPHF HCGNFTNTLV SDQEASALDS  180
CDYDTTSSYC SDSNIRLLDI ITDKNNPIEK KRRVKRSLKA KIEASIDEHM KSMMEKQEAW  240
MEKMTMVIES KERERLMREE QWRKQDATRI EREQEMWASE RAWIEARDAA LMEAFNKLAG  300
KGPDPKQASM NGMDLRFEEN GSRGKWDQII NDYLMKCSKK RRESSKSSYS YPILDNQTAG  360
VEGAMKLNGY GNEAINDGLF SFFEGDSYQR L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547013.1	1e-125	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	7e-90	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A4D9AFT5	1e-142	A0A4D9AFT5_SALSN; Uncharacterized protein
STRING	XP_009613783.1	1e-108	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]