PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100083700031
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 337aa    MW: 37934.2 Da    PI: 8.6889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100083700031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-53161421129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeel+++yL++kv ++++++  +i evd++kvePw+Lp +++ +ekewyfF+ rdkky+tg r+nrat++g
  Ote100083700031|100083700031  16 LPPGFRFHPTDEELITHYLCRKVVDSSFSA-MAIGEVDMNKVEPWELPWRANLGEKEWYFFCIRDKKYPTGLRTNRATATG 95 
                                   79*************************999.77***************888899*************************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   yWkatgkdke+++ ++ l+g+kktLvfy+grapkg k++Wv heyrle
  Ote100083700031|100083700031  96 YWKATGKDKEITR-GKILIGMKKTLVFYRGRAPKGDKSNWVCHEYRLE 142
                                   ************9.99******************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-6011163IPR003441NAC domain
PROSITE profilePS5100556.54216163IPR003441NAC domain
PfamPF023651.2E-2717141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEDNSKIIKR ADLMELPPGF RFHPTDEELI THYLCRKVVD SSFSAMAIGE VDMNKVEPWE  60
LPWRANLGEK EWYFFCIRDK KYPTGLRTNR ATATGYWKAT GKDKEITRGK ILIGMKKTLV  120
FYRGRAPKGD KSNWVCHEYR LEGKLSQDRG AKNDWVISRV FQKTSGGKKI HISGLIRLNS  180
AGKEVAPSMK TAALPPLMDP TDSGHVHCFS NTIHAAPVRI HENFINTNPI LPSFSIPLDS  240
VSAASSAFLQ TVPVQTGIGI PFHDPSIFRT FLSSYGHNMD RGFSERNEIM SVSQETVLST  300
ENSSVVSNLE TGKRPLEEQE APVGAQDFDC IWSYSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-551416915171NO APICAL MERISTEM PROTEIN
1ut4_B1e-551416915171NO APICAL MERISTEM PROTEIN
1ut7_A1e-551416915171NO APICAL MERISTEM PROTEIN
1ut7_B1e-551416915171NO APICAL MERISTEM PROTEIN
3swm_A2e-551416918174NAC domain-containing protein 19
3swm_B2e-551416918174NAC domain-containing protein 19
3swm_C2e-551416918174NAC domain-containing protein 19
3swm_D2e-551416918174NAC domain-containing protein 19
3swp_A2e-551416918174NAC domain-containing protein 19
3swp_B2e-551416918174NAC domain-containing protein 19
3swp_C2e-551416918174NAC domain-containing protein 19
3swp_D2e-551416918174NAC domain-containing protein 19
4dul_A1e-551416915171NAC domain-containing protein 19
4dul_B1e-551416915171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071688.11e-150NAC domain-containing protein 79
RefseqXP_011071689.11e-150NAC domain-containing protein 79
RefseqXP_020547905.11e-150NAC domain-containing protein 79
SwissprotQ9FLJ21e-110NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2Z7BJ031e-136A0A2Z7BJ03_9LAMI; Uncharacterized protein
STRINGXP_009625550.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]