PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100083700031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 37934.2 Da PI: 8.6889 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.5 | 2.6e-53 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+++yL++kv ++++++ +i evd++kvePw+Lp +++ +ekewyfF+ rdkky+tg r+nrat++g Ote100083700031|100083700031 16 LPPGFRFHPTDEELITHYLCRKVVDSSFSA-MAIGEVDMNKVEPWELPWRANLGEKEWYFFCIRDKKYPTGLRTNRATATG 95 79*************************999.77***************888899*************************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 yWkatgkdke+++ ++ l+g+kktLvfy+grapkg k++Wv heyrle Ote100083700031|100083700031 96 YWKATGKDKEITR-GKILIGMKKTLVFYRGRAPKGDKSNWVCHEYRLE 142 ************9.99******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-60 | 11 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.542 | 16 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEDNSKIIKR ADLMELPPGF RFHPTDEELI THYLCRKVVD SSFSAMAIGE VDMNKVEPWE 60 LPWRANLGEK EWYFFCIRDK KYPTGLRTNR ATATGYWKAT GKDKEITRGK ILIGMKKTLV 120 FYRGRAPKGD KSNWVCHEYR LEGKLSQDRG AKNDWVISRV FQKTSGGKKI HISGLIRLNS 180 AGKEVAPSMK TAALPPLMDP TDSGHVHCFS NTIHAAPVRI HENFINTNPI LPSFSIPLDS 240 VSAASSAFLQ TVPVQTGIGI PFHDPSIFRT FLSSYGHNMD RGFSERNEIM SVSQETVLST 300 ENSSVVSNLE TGKRPLEEQE APVGAQDFDC IWSYSRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 14 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 14 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 14 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 14 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 14 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 14 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 14 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 14 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 14 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 14 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 14 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 14 | 169 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-55 | 14 | 169 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 14 | 169 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071688.1 | 1e-150 | NAC domain-containing protein 79 | ||||
Refseq | XP_011071689.1 | 1e-150 | NAC domain-containing protein 79 | ||||
Refseq | XP_020547905.1 | 1e-150 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLJ2 | 1e-110 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2Z7BJ03 | 1e-136 | A0A2Z7BJ03_9LAMI; Uncharacterized protein | ||||
STRING | XP_009625550.1 | 1e-132 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Publications ? help Back to Top | |||
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