PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100083630091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26176.8 Da    PI: 9.9732
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100083630091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34.2e-281059251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  ri+n++ rqvtfskRr g+lKKA+EL +LCda+v viifsstgklye+s+
  Ote100083630091|100083630091 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAQVGVIIFSSTGKLYEFSN 59
                                  9***********************************************95 PP
2K-box77.92.6e-2681171999
                         K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                   +  ++ + +q+e+a L+++++ Lq+++R+l+Ge+L  Ls+k+Lq+Le+qLe sl+ +R kK++ + e+i+el +k +e+++
  Ote100083630091|100083630091  81 NPGSEVKFWQREAASLRQQLQDLQENHRKLMGEELYGLSVKDLQRLEDQLELSLRGVRMKKEQKFNEEIQELNRKGNEIHQ 161
                                   4567899************************************************************************** PP

                         K-box  90 enkaLrkkle 99 
                                   en +L kk++
  Ote100083630091|100083630091 162 ENIELYKKVK 171
                                   *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.048161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-32289IPR002100Transcription factor, MADS-box
CDDcd002652.90E-43278No hitNo description
PRINTSPR004041.6E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-273859IPR002100Transcription factor, MADS-box
PfamPF014867.4E-2685170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.48386178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGKIVIQR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AQVGVIIFSS TGKLYEFSNT  60
SMKSVIERYS RAKQDQHQLL NPGSEVKFWQ REAASLRQQL QDLQENHRKL MGEELYGLSV  120
KDLQRLEDQL ELSLRGVRMK KEQKFNEEIQ ELNRKGNEIH QENIELYKKV KLIEQQNMEL  180
NRKAYGATPS TAQNETPLVP IGQQLYAPIQ LQLSQPQTQN MDTSTQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20170170MEF2C
5f28_B7e-20170170MEF2C
5f28_C7e-20170170MEF2C
5f28_D7e-20170170MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099465.11e-129MADS-box transcription factor 23 isoform X1
SwissprotQ9SZJ61e-97AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A4D8YSR81e-124A0A4D8YSR8_SALSN; MADS-box transcription factor, plant
STRINGXP_010254615.11e-114(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]