PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100082580141

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 316aa MW: 35170.1 Da PI: 5.9163

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100082580141	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.9	2e-32	82	135	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kprlrWt +LH+rFv+av+qLGG+ekAtPkti+++m+vkgLtl+h+kSHLQkY Ote100082580141\|100082580141 82 KPRLRWTADLHDRFVDAVTQLGGPEKATPKTIMRTMGVKGLTLYHLKSHLQKYW 135 79***************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.321	79	139	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-30	80	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-23	82	136	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.31E-15	82	136	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	84	134	IPR001005	SANT/Myb domain
Pfam	PF14379	6.3E-19	171	225	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MDQIRTATDE DDWTRLXXXX XXXXXXXXXX XXXXXXXXDR RIRLEGWRIN AAVEAGGLDY 60 QGSLDGTYLP GDACLLLSSD PKPRLRWTAD LHDRFVDAVT QLGGPEKATP KTIMRTMGVK 120 GLTLYHLKSH LQKYWLGNLA SSKELTETSK DGSSTSASLK TMAQDINDGY QVTEALRVQM 180 EVQRRLHEQL ECFLCNPHQV QQHPQIRIEA QSKYLQSILD KACKALDDQA VACAGLEAAR 240 KELSELAIKV ANDCNGILSV RSLSHNDSDM DKNSIPYLPA RLGECSIDND VMSNGSLDSQ 300 AAALKXXXXX KAAAFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-19	82	134	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-19	82	134	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-19	82	134	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-19	82	134	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-19	82	134	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-19	82	134	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-19	82	134	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-19	82	134	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-19	82	134	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-19	82	134	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-19	82	134	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-19	82	134	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091431.1	1e-124	protein PHR1-LIKE 2 isoform X1
Swissprot	Q94A57	9e-95	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A4D9BKZ2	1e-113	A0A4D9BKZ2_SALSN; Uncharacterized protein
STRING	Gorai.005G033900.1	1e-107	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]