PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100081710051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 299aa    MW: 33156.9 Da    PI: 8.5766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100081710051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-101477148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT................TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg................kgRtlkqcksrwqkyl 48
                                  rg+W+t Ed ll + ++q G g+W++ +++                  + R++k+c++rw +yl
  Ote100081710051|100081710051 14 RGPWSTKEDSLLSNFIHQNGEGQWRSLPKKADeaavlityleskrkkgLLRCGKSCRLRWMNYL 77
                                  89**********************************************99************97 PP
2Myb_DNA-binding513.4e-1683128148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+ T++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
  Ote100081710051|100081710051  83 RGNITQDEEDLIVRLHGLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 128
                                   7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.593977IPR017877Myb-like domain
SuperFamilySSF466897.42E-2411124IPR009057Homeodomain-like
SMARTSM007174.5E-71379IPR001005SANT/Myb domain
PfamPF002491.6E-91477IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-191584IPR009057Homeodomain-like
CDDcd001677.75E-61677No hitNo description
PROSITE profilePS5129425.18678132IPR017930Myb domain
SMARTSM007175.9E-1582130IPR001005SANT/Myb domain
PfamPF002493.1E-1483128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2485132IPR009057Homeodomain-like
CDDcd001671.88E-1187128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRSPCCSKV GLRRGPWSTK EDSLLSNFIH QNGEGQWRSL PKKADEAAVL ITYLESKRKK  60
GLLRCGKSCR LRWMNYLRPG IKRGNITQDE EDLIVRLHGL LGNRWSLIAG RLPGRTDNEI  120
KNYWNTHLIK KLKTAAADDL NXXXXXXXXX XXXXXXXXXX GERKKTKSKK TVSKNDDIAP  180
AIPQPKEEDV NAAAASAGDG DVPMTKVYLP KPTRVSPAFS RSSSYDSLTS GGASSSDAVA  240
AEVVSYFPWP PLFELEDGGS GAGDDFLDEG FILPVLNHSD SISSDIMLEK VYDEYLQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22121345110B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070362.11e-118transcription repressor MYB5-like
TrEMBLA0A286M5H51e-115A0A286M5H5_SALMI; Transcription factor
STRINGMigut.O00736.1.p9e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154