PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100081090011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 303aa MW: 35066.4 Da PI: 6.1828

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100081090011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.6e-55	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yL +kv + ++++ +++ evd++kvePwdLp ++k +ekewyfF+ rd+ky++++r+nrat++g Ote100081090011\|100081090011 17 LPPGFRFHPTDEELVTHYLSRKVLDCNFRA-RAVGEVDLNKVEPWDLPWRAKIGEKEWYFFCVRDRKYPSSSRTNRATDAG 96 79************************99.88***********98899************************ PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 yWkatgkdke+++ ++ lvg+kktLvfy+grap+gekt+Wvmheyrle Ote100081090011\|100081090011 97 YWKATGKDKEIFR-GKILVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 143 *********.99****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-63	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.711	17	166	IPR003441	NAC domain
Pfam	PF02365	7.0E-30	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEEFYGHATR GDEMTELPPG FRFHPTDEEL VTHYLSRKVL DCNFRARAVG EVDLNKVEPW 60 DLPWRAKIGE KEWYFFCVRD RKYPSSSRTN RATDAGYWKA TGKDKEIFRG KILVGMKKTL 120 VFYRGRAPRG EKTNWVMHEY RLEGKNSNSF PKTTKREWVI CRVFEKNSGG NKVSISDFVR 180 TGNPCPDLPP LMDVSSDENT PPPKDEGFHV TCFSNVKQDP QNESDYRYIS SSDMNFLHPN 240 SILSSQLNLP HPILKQEQQY IGVNAEVPPT ISKYEDGLKP YDDDQDFPII STGEIDLDCL 300 WNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	12	172	10	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	12	172	10	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	12	172	10	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	12	172	10	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-54	12	172	13	174	NAC domain-containing protein 19
3swm_B	3e-54	12	172	13	174	NAC domain-containing protein 19
3swm_C	3e-54	12	172	13	174	NAC domain-containing protein 19
3swm_D	3e-54	12	172	13	174	NAC domain-containing protein 19
3swp_A	3e-54	12	172	13	174	NAC domain-containing protein 19
3swp_B	3e-54	12	172	13	174	NAC domain-containing protein 19
3swp_C	3e-54	12	172	13	174	NAC domain-containing protein 19
3swp_D	3e-54	12	172	13	174	NAC domain-containing protein 19
4dul_A	2e-54	12	172	10	171	NAC domain-containing protein 19
4dul_B	2e-54	12	172	10	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098651.1	1e-126	NAC domain-containing protein 79
Swissprot	Q9FLJ2	1e-110	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2G9H007	1e-118	A0A2G9H007_9LAMI; Uncharacterized protein
STRING	Migut.H00942.1.p	1e-114	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]