PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100079950001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 98aa    MW: 11219.7 Da    PI: 10.0235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100079950001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.6e-0619661454
                                  HHHHHHHHHHHCTSCC.C.........TTS-STCHHHHHHHHHHHHHH CS
                           HLH 14 driNsafeeLrellPk.as......kapskKlsKaeiLekAveYIksL 54
                                  ++iN+  ++L++llP+ +       +      s a +L+++++YI+sL
  Ote100079950001|100079950001 19 NQINELVSKLQQLLPEiQNrrpdkvNLFISPKSAAKVLQETCNYIRSL 66
                                  69**************76677777766666668899**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-9385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.376566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-9685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSSRRSRSRH SGSSRITDNQ INELVSKLQQ LLPEIQNRRP DKVNLFISPK SAAKVLQETC  60
NYIRSLHREV DDLSERLSEL LANTDTTEAA LIRSLLMQ
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022736077.11e-46transcription factor PRE3-like
SwissprotF4JCN99e-35PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A2I4HS141e-40A0A2I4HS14_JUGRE; transcription factor PRE3-like
STRINGevm.model.supercontig_14.152e-38(Carica papaya)
STRINGBo6g086950.13e-38(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]