PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100079860011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 293aa    MW: 33110 Da    PI: 5.6565
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100079860011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg W++eEde+l ++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  Ote100079860011|100079860011 14 RGLWSPEEDEKLMRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                                  788*******************************************97 PP
2Myb_DNA-binding29.81.3e-0967105147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rgr+T+eE++l+++++   G+        +++ gRt++++k++w+++
  Ote100079860011|100079860011  67 RGRFTPEEEKLIINLHGAVGNS-------HLP-GRTDNEIKNYWNSW 105
                                   89******************88.......***.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-25664IPR009057Homeodomain-like
PROSITE profilePS5129423.345965IPR017930Myb domain
SuperFamilySSF466891.98E-2411102IPR009057Homeodomain-like
SMARTSM007172.7E-111363IPR001005SANT/Myb domain
PfamPF002496.7E-151461IPR001005SANT/Myb domain
CDDcd001671.47E-101761No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1665110IPR009057Homeodomain-like
SMARTSM007171.1E-666108IPR001005SANT/Myb domain
PROSITE profilePS5129413.23466110IPR017930Myb domain
PfamPF002499.0E-867105IPR001005SANT/Myb domain
CDDcd001671.48E-669106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLMRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIN LHGAVGNSHL PGRTDNEIKN YWNSWIKKKI RKQSTSSSNN  120
PKINIDQCPT QHLDFINTNL LTNSSVQDTL FPLPSTSFMF DIGSIATTTI ESANIFQGNA  180
GVLNQEIAWE VNQQQQDQPE TGTEFAGPQN SSCFTPLMEK VMMPVNVQNN NNGGQVLEND  240
RMQRNEINEW IEAQSSCSSY FFWDQAEGNI GGVEIIADSS NMGTLVPSFP SSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-19141107108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074190.11e-126transcription repressor MYB6
RefseqXP_022881284.11e-126transcription factor MYB41-like
SwissprotQ8LPH62e-57MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A2G9HK991e-115A0A2G9HK99_9LAMI; Transcription factor, Myb superfamily
STRINGVIT_02s0025g00320.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124391722