PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100079570011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

ERF

Protein Properties

Length: 141aa MW: 15378 Da PI: 11.7837

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100079570011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.2	1.2e-19	30	79	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa+ +++g Ote100079570011\|100079570011 30 TYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDAAAIAIKG 79 69**887.******843...6********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.9E-22	30	88	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.788	30	87	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-13	30	79	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.2E-33	30	88	IPR001471	AP2/ERF domain
SMART	SM00380	4.9E-38	30	93	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-11	31	42	IPR001471	AP2/ERF domain
CDD	cd00018	5.66E-21	31	89	No hit	No description
PRINTS	PR00367	3.0E-11	53	69	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MXXXXXXXXX XXXXXXXXTQ PPNNTNHHPT YRGVRRRSWG KWVSEIREPR KKSRIWLGTF 60 ATAEMAARAH DAAAIAIKGR SAVLNFPELA HKLPRAASKS PKDVQAAAAK AAEMASSAAD 120 HGGGGSRPSP PXXXXXXXXX G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-20	28	87	12	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022025200.1	5e-45	ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	3e-42	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
Swissprot	Q9M080	6e-43	ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBL	A0A371HXZ5	3e-46	A0A371HXZ5_MUCPR; Ethylene-responsive transcription factor ERF034 (Fragment)
STRING	XP_002516502.1	1e-43	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]