PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100078830121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 137aa MW: 16205.9 Da PI: 9.8338 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.5 | 1.5e-22 | 1 | 41 | 11 | 51 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 vtfskRr g+lKKA+E+S+LCda+v +i+fs++gkl+ey++ Ote100078830121|100078830121 1 VTFSKRRLGLLKKAHEISILCDADVGLIVFSTKGKLFEYAT 41 8**************************************86 PP | |||||||
2 | K-box | 76.3 | 8e-26 | 57 | 131 | 1 | 75 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 y++++ k+++ + s++ e+akLk+++e Lqr+qRh++G+dL+ Ls+keLq+Le+q++ slk+iR++K + +l+ Ote100078830121|100078830121 57 YAEKQIKEVDLESPTSWTLEHAKLKARMEVLQRNQRHYIGQDLDGLSMKELQNLEHQIDVSLKHIRTRKVHTFLK 131 667888888889999******************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 3.9E-19 | 1 | 39 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-24 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-16 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.656 | 1 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-17 | 5 | 20 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-17 | 20 | 41 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.308 | 70 | 137 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.9E-19 | 71 | 131 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
VTFSKRRLGL LKKAHEISIL CDADVGLIVF STKGKLFEYA TDSCMERILE RYERYSYAEK 60 QIKEVDLESP TSWTLEHAKL KARMEVLQRN QRHYIGQDLD GLSMKELQNL EHQIDVSLKH 120 IRTRKVHTFL KFLRKIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-15 | 1 | 67 | 19 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-15 | 1 | 67 | 19 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-15 | 1 | 67 | 19 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-15 | 1 | 67 | 19 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-15 | 1 | 67 | 19 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-15 | 1 | 67 | 19 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-15 | 1 | 67 | 19 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-15 | 1 | 67 | 19 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-15 | 1 | 67 | 19 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-15 | 1 | 67 | 19 | 84 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086917.1 | 1e-77 | truncated transcription factor CAULIFLOWER A | ||||
Refseq | XP_011086918.1 | 1e-77 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q40170 | 9e-73 | AGL8_SOLLC; Agamous-like MADS-box protein AGL8 homolog | ||||
Swissprot | Q42429 | 1e-72 | AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A2G9H572 | 5e-78 | A0A2G9H572_9LAMI; MADS box transcription factor | ||||
STRING | XP_009625854.1 | 7e-74 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Publications ? help Back to Top | |||
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