PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100078250061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 707aa MW: 81161.3 Da PI: 6.7694 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.5 | 1.5e-20 | 59 | 152 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwe 77 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+ Ote100078250061|100078250061 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPTADGKLHRNRKSSRCGCQAYMRIVKRAdfdVPEWR 139 6***************999887455667********************9*******************98887676789** PP FAR1 78 vtkleleHnHela 90 vt +++ HnH+l Ote100078250061|100078250061 140 VTGFNNAHNHDLL 152 **********996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-17 | 59 | 152 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-9 | 274 | 327 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.668 | 507 | 543 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.0E-8 | 514 | 540 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.0E-6 | 518 | 545 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 707 aa Download sequence Send to blast |
MSEQTDVLNE TSENGSESSR DDNGTIEEIP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPTADGKL HRNRKSSRCG 120 CQAYMRIVKR ADFDVPEWRV TGFNNAHNHD LLKSDEVQLL PAYCTMTPDD KSRICMYAKA 180 GMSVRQMLRL LELEKGIKLG CLPFSEIDVR SLLQSFRNVE RDDDPVDLLK MCKETKDRDP 240 NFKYNYRIDS NKRLECMAWS YASSIKLYAT FGDVVVFDTT YRLDAYDMLL GIWIGVDNHG 300 TYCFFGCLLL QDENVQSFSW GFKFLKKPVK PMTWSQYDDW KAEFQRLYNL HNVEEFEIGW 360 REMIDTYGLH GNKHIISLYA HRMYWALPFL RSYFFAGMSA TFQSEMINSY IQRFLSAQSM 420 LDNFIEQVAS LLDTKDQGGA KPRLLQKVPK TSLKTGSPIE SHAATVLTPY AFLRLQEELV 480 LAPQYATMLV DDSYFIVRHH TEIDGGCKVL WAPQDEFITC SCRHFEFSGI LCRHILRVLA 540 TNNCFQIPDQ YLPLRWRESS FTKHMRTTSG KVQLLQSMIS SLITESIETE DRLNVACDHI 600 ALVLARVKEF PSTSVDDSNG VTYTSPTASF ILPDVEDSDR IAQSFSGNPD ECLSFAKLKD 660 NRRSRDEIDM YRKRRRCAVP CCGQFGHEIG NCPMVTDDLN ADGLGFL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082429.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_011082430.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_020550427.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A4D9AB63 | 0.0 | A0A4D9AB63_SALSN; Uncharacterized protein | ||||
STRING | VIT_07s0005g01120.t01 | 0.0 | (Vitis vinifera) | ||||
STRING | XP_009599705.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13535 | 14 | 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|