PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100077950011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 276aa MW: 30896.2 Da PI: 7.3746

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100077950011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102	8.1e-32	43	116	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ee++wyfFs++dkky+tg+r+nrat sg+Wkatg+dk ++ +++ +g++ktLvfykgrap+g+k+dW+mheyrl Ote100077950011\|100077950011 43 EENDWYFFSHKDKKYPTGTRTNRATYSGFWKATGRDKVIYG-NSRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 116 6789**********************************9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.251	1	144	IPR003441	NAC domain
Pfam	PF02365	5.6E-16	38	116	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-35	41	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MHENDIGERA ISGAAGVSIS PDGGGAAAVL LEEEEKCRIG WSEENDWYFF SHKDKKYPTG 60 TRTNRATYSG FWKATGRDKV IYGNSRRIGM RKTLVFYKGR APHGQKSDWI MHEYRLNDAT 120 VCNGNGNGDG GQEEGWVVCR VFKKKLLTHK ISHSPLNSTT NCNWSPPSSS SIEQMLHSID 180 FRSFSKLPAL LFPDDILPFI SNSHATAVWA QNDVARQLSS HENVDSGMSL QEERYISSAN 240 SSFSSRRYGG HHYRSEGDLW SFAPTSNDQL CDVHPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	44	145	70	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	44	145	70	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	44	145	70	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	44	145	70	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	44	145	73	169	NAC domain-containing protein 19
3swm_B	2e-32	44	145	73	169	NAC domain-containing protein 19
3swm_C	2e-32	44	145	73	169	NAC domain-containing protein 19
3swm_D	2e-32	44	145	73	169	NAC domain-containing protein 19
3swp_A	2e-32	44	145	73	169	NAC domain-containing protein 19
3swp_B	2e-32	44	145	73	169	NAC domain-containing protein 19
3swp_C	2e-32	44	145	73	169	NAC domain-containing protein 19
3swp_D	2e-32	44	145	73	169	NAC domain-containing protein 19
4dul_A	2e-32	44	145	70	166	NAC domain-containing protein 19
4dul_B	2e-32	44	145	70	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093005.1	7e-71	NAC domain-containing protein 43
Swissprot	Q84WP6	3e-59	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A4D6DKF3	1e-63	A0A4D6DKF3_9LAMI; NAC domain-containing protein 43 (Fragment)
STRING	XP_009791966.1	7e-63	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]