PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100077750191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 178aa MW: 20288.7 Da PI: 6.5294 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.7 | 2e-08 | 126 | 159 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Ote100077750191|100077750191 126 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 159 469*****************************87 PP | |||||||
2 | ELK | 26.3 | 1.7e-09 | 80 | 101 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L++ Y+g+++++++E++ Ote100077750191|100077750191 80 ELKHELKQDYKGKIVDIREEIL 101 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 0.0011 | 80 | 101 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.9E-6 | 80 | 101 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.266 | 80 | 100 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 100 | 163 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-17 | 102 | 168 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-11 | 102 | 167 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.51E-12 | 103 | 162 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-26 | 107 | 164 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.2E-18 | 120 | 159 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MRIVMDQTDA FCIHLLGDSL LTGVAPGEGT GATMSDDDED QADSEANLFD ESMDGGDNMG 60 FGPLVPSETE RSLMERVRQE LKHELKQDYK GKIVDIREEI LRKRRAGKLP GDTTSVLKAW 120 WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSSS TPKSKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 6e-14 | 103 | 167 | 8 | 72 | Homeobox protein PKNOX1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Isoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012845575.1 | 1e-105 | PREDICTED: homeobox protein knotted-1-like LET12 | ||||
Swissprot | Q0J6N4 | 3e-92 | KNOSD_ORYSJ; Homeobox protein knotted-1-like 13 | ||||
TrEMBL | A0A022QSN1 | 1e-104 | A0A022QSN1_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.K00376.1.p | 1e-102 | (Erythranthe guttata) | ||||
STRING | Migut.K00654.1.p | 1e-104 | (Erythranthe guttata) | ||||
STRING | Migut.K00664.1.p | 1e-104 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1432 | 24 | 72 |