PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100077310101

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 314aa MW: 35447.7 Da PI: 4.5896

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100077310101	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.2e-11	148	191	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Ote100077310101\|100077310101 148 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 191 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.516	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-15	146	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-12	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-14	149	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.67E-5	149	195	No hit	No description
Pfam	PF00010	3.5E-9	149	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	9.29E-4	240	281	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEYYSKEEGL LEELVGLREM EYFTNQDFST NMGCWNVADD FPTFNKSCLP TNPYLEDFAL 60 PNLNPIDQTP NLSFFHSASF GDDLSTPGFS SDSSYTNIDS QTLPNYHYNS FAHQDAAIFD 120 LDVGPPLVKG RVNXXXXXXX XXQPSKNLMA ERRRRKRLND RLSMLRSVVP KISKMDRTSI 180 LGDTIDYMKE LLESINKLQV EMNLGGNELG LLSIFNNGRP EESLIRNSPK FEVERRNSET 240 RIEICCGGKT GLLLSTVTAL EALGLDIEQC VISCFNDFAL QASCTQDLRQ RAVLDSEDIK 300 QALFRNAGYG GRCL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028083994.1	1e-93	transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-72	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A4D9BCW2	1e-120	A0A4D9BCW2_SALSN; Uncharacterized protein
STRING	EOY15558	3e-89	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]