PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100077290071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 28117.6 Da PI: 9.0959 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.4 | 6e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+ Ote100077290071|100077290071 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 97.2 | 2.5e-32 | 93 | 190 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk. 83 s++ s +e +++++qqe++kL+++i+nLq+++R+++Ge+L+ Lsl++L+ Le+++e+++++iRskKn+ll+++ie l+k+ Ote100077290071|100077290071 93 SNNGSISEVNTQYYQQESSKLRAQISNLQNQNRNMIGESLGGLSLRDLKTLESKVERGISRIRSKKNDLLCAEIEFLRKRq 173 3444499**********************************************************************9873 PP K-box 84 ekelqeenkaLrkklee 100 e el ++n++Lr+k+ e Ote100077290071|100077290071 174 EIELYHNNQCLRAKISE 190 679***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.927 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-39 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.10E-44 | 18 | 94 | No hit | No description |
SuperFamily | SSF55455 | 6.67E-33 | 18 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-26 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.6E-23 | 102 | 188 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.016 | 103 | 194 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEFQSDRSRD ISPQRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LVVFSTRGRL YEYANNSVKA TIERYKKASS DSSNNGSISE VNTQYYQQES SKLRAQISNL 120 QNQNRNMIGE SLGGLSLRDL KTLESKVERG ISRIRSKKND LLCAEIEFLR KRQEIELYHN 180 NQCLRAKISE SERAQQHMNL MPGSTEFEFI EPQPFDAPNF LQTNGLHPNE EYPKQEESNL 240 ELM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-20 | 18 | 100 | 2 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-20 | 18 | 100 | 2 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-20 | 18 | 100 | 2 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-20 | 18 | 100 | 2 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_A | 4e-20 | 18 | 100 | 2 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-20 | 18 | 100 | 2 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-20 | 18 | 100 | 2 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-20 | 18 | 100 | 2 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-20 | 18 | 100 | 2 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-20 | 18 | 100 | 2 | 86 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011102153.1 | 1e-147 | floral homeotic protein AGAMOUS-like isoform X1 | ||||
Swissprot | Q40885 | 1e-130 | AG_PETHY; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0R6FU88 | 1e-149 | A0A0R6FU88_CATSE; AGAMOUS-like protein | ||||
STRING | Migut.M00986.1.p | 1e-140 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Publications ? help Back to Top | |||
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