PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100077080011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SRS

Protein Properties

Length: 96aa MW: 10146.3 Da PI: 4.4439

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100077080011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	66.9	6.6e-21	4	45	112	153
DUF702 112 eavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +avfrcvrvss d++ +e+aYqt+vsigGhvf GiLydqG++ Ote100077080011\|100077080011 4 PAVFRCVRVSSRDNAVDEYAYQTSVSIGGHVFAGILYDQGPD 45 79**************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01624	7.3E-21	4	44	IPR006511	Lateral Root Primordium type 1, C-terminal
Pfam	PF05142	1.1E-18	4	45	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MCFPAVFRCV RVSSRDNAVD EYAYQTSVSI GGHVFAGILY DQGPDLAGNG NYVAGESSSS 60 AAATAGLLEQ PNFAARSTTA LATDLKHDVT RLELEM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092834.1	4e-30	protein SHI RELATED SEQUENCE 3-like
TrEMBL	A0A4D8ZI00	9e-27	A0A4D8ZI00_SALSN; Uncharacterized protein
STRING	Migut.B00196.1.p	6e-22	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45