PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100077000021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 316aa MW: 35764.8 Da PI: 9.0851

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100077000021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.9	4.2e-49	17	135	1	121
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+++yL+ kv ++++++ +i+evd++kvePw+Lp ++k +ekewyfF+ rdkky+tg r+nrat++g Ote100077000021\|100077000021 17 LPPGFRFHPTDEELITHYLCMKVIDSSFSA-IAIAEVDMNKVEPWELPWRAKLGEKEWYFFCVRDKKYPTGLRTNRATAAG 96 79***********************999.88***********888999*********************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121 yWkatgkdke+++ ++ lvg+kktLvfy+grapkgek++W Ote100077000021\|100077000021 97 YWKATGKDKEIFR-GKLLVGMKKTLVFYRGRAPKGEKSNW 135 *********.999********************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-52	8	146	IPR003441	NAC domain
PROSITE profile	PS51005	45.217	17	161	IPR003441	NAC domain
Pfam	PF02365	1.1E-22	18	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MENYSVTMKR GDDLIQLPPG FRFHPTDEEL ITHYLCMKVI DSSFSAIAIA EVDMNKVEPW 60 ELPWRAKLGE KEWYFFCVRD KKYPTGLRTN RATAAGYWKA TGKDKEIFRG KLLVGMKKTL 120 VFYRGRAPKG EKSNWNDWVI SRVFQKTSGG KKIHISGLMR MNSAGNEXXX XXXXXLMDPS 180 DSGHVHCFSN TIHAAPARIQ ENFINTNPIL PSSSIPMDSS AFTWEQIRFP PVQTGIGFPA 240 SIPLQDPSIL RTFLASYGQN MNHGLRNRKE IMSVSQETVM STENSSVVSN LETGKRPFPG 300 QGDPVQPQDL DCIWGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-48	15	152	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-48	15	152	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-48	15	152	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-48	15	152	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-48	15	152	18	174	NAC domain-containing protein 19
3swm_B	8e-48	15	152	18	174	NAC domain-containing protein 19
3swm_C	8e-48	15	152	18	174	NAC domain-containing protein 19
3swm_D	8e-48	15	152	18	174	NAC domain-containing protein 19
3swp_A	8e-48	15	152	18	174	NAC domain-containing protein 19
3swp_B	8e-48	15	152	18	174	NAC domain-containing protein 19
3swp_C	8e-48	15	152	18	174	NAC domain-containing protein 19
3swp_D	8e-48	15	152	18	174	NAC domain-containing protein 19
4dul_A	8e-48	15	152	15	171	NAC domain-containing protein 19
4dul_B	8e-48	15	152	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071688.1	1e-141	NAC domain-containing protein 79
Refseq	XP_011071689.1	1e-141	NAC domain-containing protein 79
Refseq	XP_020547905.1	1e-141	NAC domain-containing protein 79
Swissprot	Q9FLJ2	1e-97	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3ZFN4	1e-124	A0A1S3ZFN4_TOBAC; NAC domain-containing protein 100-like
STRING	XP_009625550.1	1e-125	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]