PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100076790011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

ERF

Protein Properties

Length: 422aa MW: 46859.9 Da PI: 4.1348

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100076790011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.5	8.1e-09	109	137	27	55
AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55 k++r +lg+f+taeeAa +++a+ kl+g Ote100076790011\|100076790011 109 KKTRLWLGTFDTAEEAAMVYDNAAIKLRG 137 4599***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	4.0E-11	54	151	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.261	57	145	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.2E-15	108	144	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.88E-11	108	145	IPR016177	DNA-binding domain
Pfam	PF00847	1.9E-4	108	137	IPR001471	AP2/ERF domain
CDD	cd00018	8.33E-17	109	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
METLKHNKIT KKVVKPMQHQ APKTIRFTVN DPDATDSSSX XXXXXXXXXE CLSGGRKERN 60 SLRRTSRPQQ EEVSAGSSEE FAGGHGASGP XXXXXXXXXX XXXXXXXCKK TRLWLGTFDT 120 AEEAAMVYDN AAIKLRGPDA LTNFVIPSKI ESFKTKDRYE SASVLSGSGY DSGDELHKYN 180 LSPASVLNFR SSSGNQSHQS PVSSSKHEDD LSEAMCSNVT VDSAVPIAEE CFTLSDEDTN 240 FLDGIFEVEN DDQTLLIKEG MASSPSPIHK TVEEECVDQG RVHMFPVYSD KEKCLTSTTC 300 VMLPDYSDNL PMDADFLDEF FNFESENQTL MFDDSKSSDD IQVGLGDFNE ELCVEEFDLE 360 VLKHEFPGLF KDSFEDANIK VFEFENEMGG AVEDDVSFGE LDSFLRVDGY CTLADGGVLE 420 VS

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

METLKHNKIT KKVVKPMQHQ APKTIRFTVN DPDATDSSSX XXXXXXXXXE CLSGGRKERN  60
SLRRTSRPQQ EEVSAGSSEE FAGGHGASGP XXXXXXXXXX XXXXXXXCKK TRLWLGTFDT  120
AEEAAMVYDN AAIKLRGPDA LTNFVIPSKI ESFKTKDRYE SASVLSGSGY DSGDELHKYN  180
LSPASVLNFR SSSGNQSHQS PVSSSKHEDD LSEAMCSNVT VDSAVPIAEE CFTLSDEDTN  240
FLDGIFEVEN DDQTLLIKEG MASSPSPIHK TVEEECVDQG RVHMFPVYSD KEKCLTSTTC  300
VMLPDYSDNL PMDADFLDEF FNFESENQTL MFDDSKSSDD IQVGLGDFNE ELCVEEFDLE  360
VLKHEFPGLF KDSFEDANIK VFEFENEMGG AVEDDVSFGE LDSFLRVDGY CTLADGGVLE  420
VS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA494	23	126