PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100076500021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 176aa MW: 20502.8 Da PI: 4.013

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100076500021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.3	7.8e-29	8	122	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGf+F+Ptdeel+v++L ++++ +++ ++i+++diy+++P dL++k+ ++++ wyfF+ ++nr+t++g Ote100076500021\|100076500021 8 LPPGFQFDPTDEELIVNFLYPRATYSPFYQ-NIIPQLDIYETDPCDLHEKAFGSKNGWYFFCGL--------KQNRVTRKG 79 79***********************888.89**********977777889**76........679** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk+ g+++++++++g +vg+k +vf +g++t+ +m+e+rl Ote100076500021\|100076500021 80 CWKEHGSSEPIFTSNGDEVGIKIYFVFC----GDGVQTNMIMEEFRL 122 ***********************9....68899******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-37	4	138	IPR003441	NAC domain
PROSITE profile	PS51005	31.245	8	140	IPR003441	NAC domain
Pfam	PF02365	1.2E-17	9	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MGEDQMALPP GFQFDPTDEE LIVNFLYPRA TYSPFYQNII PQLDIYETDP CDLHEKAFGS 60 KNGWYFFCGL KQNRVTRKGC WKEHGSSEPI FTSNGDEVGI KIYFVFCGDG VQTNMIMEEF 120 RLNDSTPLAH EWVLCRVRDC EEKIMEDDEG VELSYLDEVF FSMDDDDRDE ITFPTH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-26	5	137	14	162	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-26	5	137	14	162	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-26	5	137	14	162	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-26	5	137	14	162	NO APICAL MERISTEM PROTEIN
3swm_A	1e-26	5	137	17	165	NAC domain-containing protein 19
3swm_B	1e-26	5	137	17	165	NAC domain-containing protein 19
3swm_C	1e-26	5	137	17	165	NAC domain-containing protein 19
3swm_D	1e-26	5	137	17	165	NAC domain-containing protein 19
3swp_A	1e-26	5	137	17	165	NAC domain-containing protein 19
3swp_B	1e-26	5	137	17	165	NAC domain-containing protein 19
3swp_C	1e-26	5	137	17	165	NAC domain-containing protein 19
3swp_D	1e-26	5	137	17	165	NAC domain-containing protein 19
4dul_A	1e-26	5	137	14	162	NAC domain-containing protein 19
4dul_B	1e-26	5	137	14	162	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099725.1	1e-59	NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-42	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A4D9A0K9	2e-71	A0A4D9A0K9_SALSN; Uncharacterized protein
TrEMBL	A0A4D9BUG2	2e-71	A0A4D9BUG2_SALSN; Uncharacterized protein
STRING	XP_009792377.1	2e-47	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13785	12	15

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]