PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100075930001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family DBB
Protein Properties Length: 275aa    MW: 30589.7 Da    PI: 6.0809
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100075930001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-06430531
                      zf-B_box  5 kCpeHeekelqlfCedCqqllCedCll 31
                                   C+ +++ e++++C  ++  lC  C  
  Ote100075930001|100075930001  4 LCDVCGKGEASFYCAADEASLCTACDH 30
                                  7******88****************86 PP
2zf-B_box22.32.7e-073061938
                      zf-B_box  9 HeekelqlfCedCqqllCedClleeHkg..Ht 38
                                  H e ++ lfC++++  lC +C  ++Hk   Ht
  Ote100075930001|100075930001 30 HRERKAFLFCQQDRAILCSECDNSIHKVnqHT 61
                                  89988*********************656654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000212.72E-5332No hitNo description
PROSITE profilePS5011910.2532069IPR000315B-box-type zinc finger
SMARTSM003361.1E-92069IPR000315B-box-type zinc finger
CDDcd000216.14E-82866No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKILCDVCGK GEASFYCAAD EASLCTACDH RERKAFLFCQ QDRAILCSEC DNSIHKVNQH  60
TQKHTRXXXX XXXXXXXXXG VRISASPTLY SESTAVSNVK DDNDTVSKSP PAKGTTPTAA  120
AQEPSERSCS NTVQYATSSI SEYLMEMLPG WHVEDLLEDS SSPSACCKNG ENELVLPFWD  180
GDFHSSSMGF PTENMGFWVP QVQLHQTQNQ SSLELDNHSY NNLSFGIANA CRDQFKLFST  240
NTIKSTRKRT QDNSFAVPQI SPPSASVSKR SRNFW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074989.13e-70B-box zinc finger protein 20
TrEMBLA0A4D8Z7U92e-77A0A4D8Z7U9_SALSN; Uncharacterized protein
STRINGMigut.N03131.1.p1e-66(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364