PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100074970091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NF-YC | ||||||||
Protein Properties | Length: 244aa MW: 27192.7 Da PI: 5.5226 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.5 | 6.1e-56 | 70 | 174 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+d Ote100074970091|100074970091 70 QLQAFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKND 150 89******988889******************************************************************* PP NF-YC 79 iaaavtrtdifdflvdivprdelk 102 iaaa++rtd+fdflvdi+prdelk Ote100074970091|100074970091 151 IAAAISRTDVFDFLVDIIPRDELK 174 *********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.88E-34 | 62 | 164 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.6E-37 | 84 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-21 | 92 | 155 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDHPDHHNQQ QQQPGVGGSL AYATPPFQTA SMVATGTPAV TVSSPTSFPP QQQLAYHQAQ 60 HFQSQQHQQQ LQAFWANQMQ EIEQTTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA 120 KACEMFILEL TLRSWIHTEE NKRRTLQKND IAAAISRTDV FDFLVDIIPR DELKEEGLGI 180 TKGSIPLVGS NPDAVPYYYM PPQGPVGAAG MIMGKPVDLY GGQPPPPFLQ WPQQQPPSQE 240 QPSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-59 | 78 | 170 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095726.1 | 1e-119 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011095727.1 | 1e-119 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 1e-81 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A4D9B5N4 | 1e-128 | A0A4D9B5N4_SALSN; Uncharacterized protein | ||||
STRING | cassava4.1_014024m | 1e-106 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3422 | 24 | 47 |
Publications ? help Back to Top | |||
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