PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100074170021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 169aa    MW: 19806.3 Da    PI: 8.4714
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100074170021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-16956148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W +eEd +l+ av+ lG ++W++ a+  g++R++k+c++rw +yl
  Ote100074170021|100074170021  9 KGPWLEEEDNQLAAAVAVLGDRRWDALAKASGLRRSGKSCRLRWMNYL 56
                                  79********************************************97 PP
2Myb_DNA-binding51.81.8e-1663106247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   g+ + eE+ +++++++++G++ W++Iar+++ gRt++ +k++w+k 
  Ote100074170021|100074170021  63 GNISLEEERIIIELHQKWGNR-WSKIARRLP-GRTDNKIKNYWRKC 106
                                   56789****************.*********.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.733456IPR017930Myb domain
SuperFamilySSF466891.49E-277103IPR009057Homeodomain-like
SMARTSM007173.3E-13858IPR001005SANT/Myb domain
PfamPF002491.2E-14956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-211063IPR009057Homeodomain-like
CDDcd001671.57E-81156No hitNo description
PROSITE profilePS5129424.14557111IPR017930Myb domain
SMARTSM007172.8E-1461109IPR001005SANT/Myb domain
PfamPF002491.6E-1463106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2364109IPR009057Homeodomain-like
CDDcd001674.33E-1066105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MQEEAEVRKG PWLEEEDNQL AAAVAVLGDR RWDALAKASG LRRSGKSCRL RWMNYLRPNL  60
KHGNISLEEE RIIIELHQKW GNRWSKIARR LPGRTDNKIK NYWRKCLAKS PCPIKEDESG  120
PSDEPLSLTR SPYETRLTEW MSNWASDARE EQLNYSPQWD ISLWGEGDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2561071101MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094730.14e-70transcription factor MYB27
RefseqXP_012831805.12e-70PREDICTED: myb-related protein MYBAS2-like
SwissprotQ9SCP12e-48MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A059PRR22e-75A0A059PRR2_SALMI; MYB-related transcription factor
STRINGMigut.J00446.1.p8e-70(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]