PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100073570141
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 300aa    MW: 32724.3 Da    PI: 6.3711
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100073570141genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.8e-16221257135
                          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Ote100073570141|100073570141 221 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 257
                                   *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.1E-1278113IPR010399Tify domain
PROSITE profilePS5132014.7978113IPR010399Tify domain
PfamPF062001.1E-1282112IPR010399Tify domain
PROSITE profilePS5101712.104145187IPR010402CCT domain
PfamPF062031.6E-13145187IPR010402CCT domain
PROSITE profilePS501149.842215275IPR000679Zinc finger, GATA-type
SMARTSM004019.7E-13215268IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-13218279No hitNo description
Gene3DG3DSA:3.30.50.108.8E-16220262IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.20E-14220263No hitNo description
PROSITE patternPS003440221248IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14221257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDGIHGGEPG MMHYLQDQNH HGLHHHHMSN GNAIDQDEHG ENNNIGTSGG VDEVMDGDVG  60
SNIGSQTDNG ALIPHVGGNE NGDQLTLSFQ GQVYVFDSVS PEKVQAVLLL LGGREVPPNI  120
PTLPVSSPNN RGLSTTPQKF NVPQRLASLI RFREKRKERN FDXXXRYTVR KEVALRMQRN  180
KGQFTSSKPN HDDSASAVSS WDSNQSWVTD GNGSQVQDIS CRHCGISEKS TPMMRRGPEG  240
PRTLCNACGL MWANKGTLRD LSKTTPLGTN PLRNRSEENG NFEAEEMVLS VAGNGNDSSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072744.11e-176GATA transcription factor 28
SwissprotQ8H1G01e-109GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A4D8YWD20.0A0A4D8YWD2_SALSN; Uncharacterized protein
STRINGMigut.I01184.1.p1e-161(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348