PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100072640031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 346aa MW: 38094.9 Da PI: 9.5342

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100072640031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	110	133	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++Cg+ F+ ++L+ H+ + H Ote100072640031\|100072640031 110 FSCSHCGQIFPKIESLELHQAVrH 133 89******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.847	110	138	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	112	133	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.06E-8	135	216	No hit	No description
SuperFamily	SSF56399	8.06E-8	243	280	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MAVLKSQQPK LKTRQPQSKQ AYSWDQIKNL VSCKHNSPIY SSCTRICTFS EVVHGNTIIL 60 DPPYKLPAAE KKSGRGAPSS GMQLRKLSGC YECRAVVDPT KHPLPRTSVF SCSHCGQIFP 120 KIESLELHQA VRHAVSEVGA DDSSRNIVEI IFKSSWLKKE NPVCEIQRIL KVHNTPRTIQ 180 RFEEYRDSIK LRAKRNARCA ADGNELLRFH AATITCALGA GGSTSLCGSM PACXXXXXXX 240 XXXXXXXGIC TTASSGGADA YLGGGGRAML VCRVIAGRVK PRVEVEGDQV GGXXXXXXXX 300 XXXAGVLGLI IPIWRSWLCS VQGLYCLVLS SFTKQMRLNN RLLCFE

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MAVLKSQQPK LKTRQPQSKQ AYSWDQIKNL VSCKHNSPIY SSCTRICTFS EVVHGNTIIL  60
DPPYKLPAAE KKSGRGAPSS GMQLRKLSGC YECRAVVDPT KHPLPRTSVF SCSHCGQIFP  120
KIESLELHQA VRHAVSEVGA DDSSRNIVEI IFKSSWLKKE NPVCEIQRIL KVHNTPRTIQ  180
RFEEYRDSIK LRAKRNARCA ADGNELLRFH AATITCALGA GGSTSLCGSM PACXXXXXXX  240
XXXXXXXGIC TTASSGGADA YLGGGGRAML VCRVIAGRVK PRVEVEGDQV GGXXXXXXXX  300
XXXAGVLGLI IPIWRSWLCS VQGLYCLVLS SFTKQMRLNN RLLCFE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083531.2	1e-110	LOW QUALITY PROTEIN: uncharacterized protein LOC105166030
TrEMBL	A0A4D8YPE0	1e-119	A0A4D8YPE0_SALSN; Uncharacterized protein
STRING	Migut.C00823.1.p	1e-100	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34