PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100072030011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 157aa MW: 18314.7 Da PI: 8.7699 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.7 | 2.5e-10 | 89 | 124 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ Ote100072030011|100072030011 89 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 124 4679*****************************985 PP | |||||||
2 | ELK | 37.6 | 4.8e-13 | 44 | 65 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sLkqE+s Ote100072030011|100072030011 44 ELKNHLLKKYSGYLSSLKQELS 65 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 2.3E-10 | 44 | 65 | IPR005539 | ELK domain |
SMART | SM01188 | 1.0E-6 | 44 | 65 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.243 | 44 | 64 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.119 | 64 | 127 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-20 | 65 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-13 | 66 | 131 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-28 | 69 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.73E-13 | 76 | 128 | No hit | No description |
Pfam | PF05920 | 2.8E-17 | 84 | 123 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MVFFLSELHE LDKSEGIGSS DDDQDNSGGE TALREIDPRA EDRELKNHLL KKYSGYLSSL 60 KQELSKKKKK GKLPKEARQK LLNWWELHYK WPYPSESEKV ALAESTGLDQ KQINNWFINQ 120 RKRHWKPSED MQFMVMDGLH PHNAALYMGN APYRLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019153386.1 | 3e-86 | PREDICTED: homeotic protein knotted-1-like | ||||
Swissprot | O04134 | 4e-83 | KNAP1_MALDO; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A8QXP7 | 1e-85 | A8QXP7_IPOBA; Class-I knotted1-like homeobox protein IBKN3 | ||||
STRING | XP_002510027.1 | 6e-85 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4973 | 23 | 33 |