PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100071630081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 200aa    MW: 23547.9 Da    PI: 9.7188
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100071630081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.6e-29959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krienk+nrqvtfskRr g+lKKA+E+S+LCda+v +i+fs++gkl+ey++
  Ote100071630081|100071630081  9 KRIENKINRQVTFSKRRSGLLKKAHEISILCDADVGLIVFSTKGKLFEYAT 59
                                  79***********************************************86 PP
2K-box86.55.3e-2976164290
                         K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                                   ++++ k+ e +  +s++ e+akLk+++e Lqr+qRh++GedLe+Ls+keLq+Le+q++ slk iR++Kn+ll e+i+elqk
  Ote100071630081|100071630081  76 NEKQLKEPELELPASWTLEHAKLKARMEVLQRNQRHYMGEDLETLSMKELQNLEHQIDISLKYIRTRKNQLLNESISELQK 156
                                   556666666667789****************************************************************** PP

                         K-box  83 kekelqee 90 
                                   k ke +++
  Ote100071630081|100071630081 157 KIKEREKQ 164
                                   99887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.735161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-33288IPR002100Transcription factor, MADS-box
CDDcd002651.15E-39279No hitNo description
PRINTSPR004048.8E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.38788175IPR002487Transcription factor, K-box
PfamPF014861.2E-2290164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISILCD ADVGLIVFST KGKLFEYATD  60
SCMERILERY ERYSYNEKQL KEPELELPAS WTLEHAKLKA RMEVLQRNQR HYMGEDLETL  120
SMKELQNLEH QIDISLKYIR TRKNQLLNES ISELQKKIKE REKQLARKAT ATRTTTTEQQ  180
NHDFNCSGFD HTETMGSINI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21174173Myocyte-specific enhancer factor 2B
1tqe_Q2e-21174173Myocyte-specific enhancer factor 2B
1tqe_R2e-21174173Myocyte-specific enhancer factor 2B
1tqe_S2e-21174173Myocyte-specific enhancer factor 2B
6byy_A3e-21174173MEF2 CHIMERA
6byy_B3e-21174173MEF2 CHIMERA
6byy_C3e-21174173MEF2 CHIMERA
6byy_D3e-21174173MEF2 CHIMERA
6bz1_A3e-21174173MEF2 CHIMERA
6bz1_B3e-21174173MEF2 CHIMERA
6bz1_C3e-21174173MEF2 CHIMERA
6bz1_D3e-21174173MEF2 CHIMERA
6c9l_A2e-21174173Myocyte-specific enhancer factor 2B
6c9l_B2e-21174173Myocyte-specific enhancer factor 2B
6c9l_C2e-21174173Myocyte-specific enhancer factor 2B
6c9l_D2e-21174173Myocyte-specific enhancer factor 2B
6c9l_E2e-21174173Myocyte-specific enhancer factor 2B
6c9l_F2e-21174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086917.11e-110truncated transcription factor CAULIFLOWER A
RefseqXP_011086918.11e-110truncated transcription factor CAULIFLOWER A
SwissprotQ424295e-97AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2G9H5721e-108A0A2G9H572_9LAMI; MADS box transcription factor
TrEMBLA0A4D8Z9X71e-109A0A4D8Z9X7_SALSN; MADS-box transcription factor, plant
STRINGXP_009792071.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]