PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100071630021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23971.1 Da PI: 8.4517 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.2 | 9.3e-23 | 1 | 41 | 11 | 51 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 vtfskRr g+lKKA+E+S+LCda+v +i+fs++gkl+ey++ Ote100071630021|100071630021 1 VTFSKRRSGLLKKAHEISILCDADVGLIVFSTKGKLFEYAT 41 8**************************************86 PP | |||||||
2 | K-box | 86.4 | 5.6e-29 | 58 | 146 | 2 | 90 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 ++++ k+ e + +s++ e+akLk+++e Lqr+qRh++GedLe+Ls+keLq+Le+q++ slk iR++Kn+ll e+i+elqk Ote100071630021|100071630021 58 NEKQLKEPELELPASWTLEHAKLKARMEVLQRNQRHYMGEDLETLSMKELQNLEHQIDISLKYIRTRKNQLLNESISELQK 138 556666666667789****************************************************************** PP K-box 83 kekelqee 90 k ke +++ Ote100071630021|100071630021 139 KIKEREKQ 146 99887654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.077 | 1 | 43 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-19 | 1 | 39 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.7E-17 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-24 | 1 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-17 | 5 | 20 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-17 | 20 | 41 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.387 | 70 | 157 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.2E-22 | 72 | 146 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
VTFSKRRSGL LKKAHEISIL CDADVGLIVF STKGKLFEYA TDSCMERILE RYERYSYNEK 60 QLKEPELELP ASWTLEHAKL KARMEVLQRN QRHYMGEDLE TLSMKELQNL EHQIDISLKY 120 IRTRKNQLLN ESISELQKKI KEREKQLARK ATATRTTTTE QQNHDFNCSG FDHTETMGSI 180 NISEVYPPXX XXXXXXXXXX XASPK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086917.1 | 6e-98 | truncated transcription factor CAULIFLOWER A | ||||
Refseq | XP_011086918.1 | 6e-98 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q42429 | 5e-84 | AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A2G9H572 | 9e-95 | A0A2G9H572_9LAMI; MADS box transcription factor | ||||
STRING | XP_009792071.1 | 2e-89 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Publications ? help Back to Top | |||
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