PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100071550021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

CAMTA

Protein Properties

Length: 1212aa MW: 136374 Da PI: 5.7612

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100071550021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.9	8e-53	108	261	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg..... 77 +e ++rwl++ ei++iL+n++k+++t e+++rp++gsl+L++rk++ryfrkDG+sw+kkkdgktv+E+he+LK Ote100071550021\|100071550021 108 QEaQHRWLRPAEICEILQNYKKFRITPEPPNRPPNGSLFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHERLKASHfsyys 188 5559*************************************************************************** PP CG-1 78 ................................vevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 v+vl+cyYah+e n++fqrr+ywlLeee+++ivlvhy+evk Ote100071550021\|100071550021 189 mnlsslglhclvkdviitkmtylvvyifqagsVDVLHCYYAHGEGNENFQRRSYWLLEEEMSHIVLVHYREVK 261 ********************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.71	103	266	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.1E-65	106	261	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.6E-29	109	183	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.3E-13	217	259	IPR005559	CG-1 DNA-binding domain
CDD	cd00204	5.31E-16	814	926	No hit	No description
Gene3D	G3DSA:1.25.40.20	3.9E-19	816	930	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	20.367	817	938	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.58E-19	819	928	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	7.8E-9	839	929	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.446	867	899	IPR002110	Ankyrin repeat
SMART	SM00248	1.7E-4	867	896	IPR002110	Ankyrin repeat
SMART	SM00248	73	906	935	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	5.58E-8	1032	1089	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	21	1038	1060	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.092	1040	1059	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.309	1040	1068	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0016	1061	1083	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.816	1062	1086	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	9.8E-5	1064	1083	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1212 aa Download sequence Send to blast
HTPFSSIFLT VELFPYFFHF PSSYFFSTSI SIFSTFIHPC QHYLFLYSLR ARCIFYSNWG 60 TVLVLTPIWK RVSRVWTGFI NQLLFGAVMA ESRRYALNAQ LDIDQILQEA QHRWLRPAEI 120 CEILQNYKKF RITPEPPNRP PNGSLFLFDR KVLRYFRKDG HSWRKKKDGK TVKEAHERLK 180 ASHFSYYSMN LSSLGLHCLV KDVIITKMTY LVVYIFQAGS VDVLHCYYAH GEGNENFQRR 240 SYWLLEEEMS HIVLVHYREV KGNRTNFNHI RDADSIPSSR QNEDVLSSDA DSSAASRFQS 300 YDYQRASPIT DTTSLNSTLA SDLEDAESVY RHQASPGFHS SNDLQSPAVQ TDTGPTPYHS 360 ILISINQLTF FCNYQGQSSG IPGMSFGHTT RGEENRSPMD SGLTYDFQQD IGFPSWGSVA 420 ESSSASYQSV DFQLLPPSTQ SSPMATMPLQ DNELLDHVFS GAFGKKQELG NHSDGLGEWQ 480 APDHGSLHAP KWSTDQKSDG NLNLGQNLNH PPLRQPLLYD LATKLNDANQ VDLSDSMGLH 540 NTYLTDQNGQ PLEIDLQIQA LGSGGSSLKS ELDGNLNAGD KTNNPAPRKP LLDGVMREGL 600 KKLDSFDRWI SKELDDVTES TMQSDSGVYW ETVGGGDVDD SSISTQVPSD SYVLGPSLAQ 660 DQLFSIIDFS PNWAYSGSEI KLLIMGRFLR SQEVADYKWA CMFGELEVPA EVVGDGILRS 720 CSEVREFEFR TSSVEDVDSD ETRLRMRFGK LLSLGSSIQQ TSVQVIDEET YQLYTKISAL 780 LKDDTEWEEM LSVTNKVEDQ ADQLLQKLLK EKLHNWLLQK ITEDGKGPNV LDEEGLGVLH 840 FAAALGYDWA IPPTIAAGVS VNFRDVNGWT ALHWAAFYGR EHTVAFLISI GASPGALTDP 900 TPMYPSGETP ADLAASNGHK GIAGYLAESS LSSHLSSLDL KVSEQSGYTE KAVETVSERI 960 ATPVGAGDLP HGLSMKDSLA AVRNATQAAA RIHQVFRVQS FQRKQLTEYG DNEYGISDER 1020 ALSLLALKTN KAGQHDEPVH AAAVRIQNKF RSWKGRKDFL LIRRQIIKIQ AHVRGHQVRK 1080 NYKKIIWSVG ILDKVILRWR RKGRGLSGFK SEAHAASSSM IETETKEDEY DFLKEGRKQS 1140 EERLQKALAR VKSMVQYPEA RDQYRRLLNV VSEMQEKKAA QEMMLNNPEV DFDEDLIEFE 1200 ALLDDDSYLP IT

Sequence ? help Back to Top

Protein Sequence Length: 1212 aa Download sequence Send to blast

HTPFSSIFLT VELFPYFFHF PSSYFFSTSI SIFSTFIHPC QHYLFLYSLR ARCIFYSNWG  60
TVLVLTPIWK RVSRVWTGFI NQLLFGAVMA ESRRYALNAQ LDIDQILQEA QHRWLRPAEI  120
CEILQNYKKF RITPEPPNRP PNGSLFLFDR KVLRYFRKDG HSWRKKKDGK TVKEAHERLK  180
ASHFSYYSMN LSSLGLHCLV KDVIITKMTY LVVYIFQAGS VDVLHCYYAH GEGNENFQRR  240
SYWLLEEEMS HIVLVHYREV KGNRTNFNHI RDADSIPSSR QNEDVLSSDA DSSAASRFQS  300
YDYQRASPIT DTTSLNSTLA SDLEDAESVY RHQASPGFHS SNDLQSPAVQ TDTGPTPYHS  360
ILISINQLTF FCNYQGQSSG IPGMSFGHTT RGEENRSPMD SGLTYDFQQD IGFPSWGSVA  420
ESSSASYQSV DFQLLPPSTQ SSPMATMPLQ DNELLDHVFS GAFGKKQELG NHSDGLGEWQ  480
APDHGSLHAP KWSTDQKSDG NLNLGQNLNH PPLRQPLLYD LATKLNDANQ VDLSDSMGLH  540
NTYLTDQNGQ PLEIDLQIQA LGSGGSSLKS ELDGNLNAGD KTNNPAPRKP LLDGVMREGL  600
KKLDSFDRWI SKELDDVTES TMQSDSGVYW ETVGGGDVDD SSISTQVPSD SYVLGPSLAQ  660
DQLFSIIDFS PNWAYSGSEI KLLIMGRFLR SQEVADYKWA CMFGELEVPA EVVGDGILRS  720
CSEVREFEFR TSSVEDVDSD ETRLRMRFGK LLSLGSSIQQ TSVQVIDEET YQLYTKISAL  780
LKDDTEWEEM LSVTNKVEDQ ADQLLQKLLK EKLHNWLLQK ITEDGKGPNV LDEEGLGVLH  840
FAAALGYDWA IPPTIAAGVS VNFRDVNGWT ALHWAAFYGR EHTVAFLISI GASPGALTDP  900
TPMYPSGETP ADLAASNGHK GIAGYLAESS LSSHLSSLDL KVSEQSGYTE KAVETVSERI  960
ATPVGAGDLP HGLSMKDSLA AVRNATQAAA RIHQVFRVQS FQRKQLTEYG DNEYGISDER  1020
ALSLLALKTN KAGQHDEPVH AAAVRIQNKF RSWKGRKDFL LIRRQIIKIQ AHVRGHQVRK  1080
NYKKIIWSVG ILDKVILRWR RKGRGLSGFK SEAHAASSSM IETETKEDEY DFLKEGRKQS  1140
EERLQKALAR VKSMVQYPEA RDQYRRLLNV VSEMQEKKAA QEMMLNNPEV DFDEDLIEFE  1200
ALLDDDSYLP IT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097567.1	0.0	calmodulin-binding transcription activator 1-like
Refseq	XP_011097568.1	0.0	calmodulin-binding transcription activator 1-like
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A4D8Z707	0.0	A0A4D8Z707_SALSN; Uncharacterized protein
STRING	XP_009613615.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2230	21	46

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]