PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100069630011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 469aa MW: 52138.8 Da PI: 4.6612

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100069630011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	336.4	5.2e-103	125	429	1	307
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l+elL++cA+a+s+++l + ++l+ + + +s +g+p+qRl ay++e+L ar +s++++y+ l+++e + s++ l+++ Ote100069630011\|100069630011 125 LKELLIACARALSANKLDQFEKLVGHARSAVSISGEPIQRLGAYLVEGLVARKESSGTNIYRGLNCNEPD---SKDLLSYM 202 5799***************************************************************9...9*** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 ++++e++P++kf++++aN aI ea ++e+r+Hi+Df + qG+QW++LlqaLa+Rp+gpp++RiTg+++p s+ + + l + Ote100069630011\|100069630011 203 HILYEICPYMKFGYMAANGAIAEACKNEDRMHIVDFHMAQGTQWMPLLQALAARPSGPPHVRITGIDDPVSKyaRGDGLAA 283 *****************************************************************999999** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 +++rL+ + e++++++ef++ v +++ e+L++k gEalaVn+ lqlh+++desv+++++rd +L++vksl+Pkvv++ Ote100069630011\|100069630011 284 VERRLTAISEKFNISLEFHA-VPVFAPEITKEMLDIKVGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLNPKVVTL 363 ****************.688889999*********************************************** PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307 veqe+ +n+++Fl rf e+l+yysa+f+s+++++pr+ +eri+vE+++l+r+ivn++aceg+er+ Ote100069630011\|100069630011 364 VEQESHTNTAPFLPRFRETLDYYSAMFESIDVTMPRDRRERINVEQQCLARDIVNIIACEGNERVX 429 *************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.011	99	469	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-100	125	429	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MESHYLGRTG SDLSYSTVSS IPTRLFESLK SDYPSETASD SSVDYGANPY QSSPFAFRHQ 60 DTSDLPAFLS NASNSRNIEH ALLELESAVM APETTSDSSM NQIHIDDRGG GLEDFTFQGF 120 PPNNLKELLI ACARALSANK LDQFEKLVGH ARSAVSISGE PIQRLGAYLV EGLVARKESS 180 GTNIYRGLNC NEPDSKDLLS YMHILYEICP YMKFGYMAAN GAIAEACKNE DRMHIVDFHM 240 AQGTQWMPLL QALAARPSGP PHVRITGIDD PVSKYARGDG LAAVERRLTA ISEKFNISLE 300 FHAVPVFAPE ITKEMLDIKV GEALAVNFPL QLHHTPDESV DVSNPRDGLL RMVKSLNPKV 360 VTLVEQESHT NTAPFLPRFR ETLDYYSAMF ESIDVTMPRD RRERINVEQQ CLARDIVNII 420 ACEGNERVXX XXXXXXGEVA VEVYDGWFST VSLELLCEFC DQGIVETVF

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MESHYLGRTG SDLSYSTVSS IPTRLFESLK SDYPSETASD SSVDYGANPY QSSPFAFRHQ  60
DTSDLPAFLS NASNSRNIEH ALLELESAVM APETTSDSSM NQIHIDDRGG GLEDFTFQGF  120
PPNNLKELLI ACARALSANK LDQFEKLVGH ARSAVSISGE PIQRLGAYLV EGLVARKESS  180
GTNIYRGLNC NEPDSKDLLS YMHILYEICP YMKFGYMAAN GAIAEACKNE DRMHIVDFHM  240
AQGTQWMPLL QALAARPSGP PHVRITGIDD PVSKYARGDG LAAVERRLTA ISEKFNISLE  300
FHAVPVFAPE ITKEMLDIKV GEALAVNFPL QLHHTPDESV DVSNPRDGLL RMVKSLNPKV  360
VTLVEQESHT NTAPFLPRFR ETLDYYSAMF ESIDVTMPRD RRERINVEQQ CLARDIVNII  420
ACEGNERVXX XXXXXXGEVA VEVYDGWFST VSLELLCEFC DQGIVETVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-49	129	428	8	305	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095306.1	0.0	scarecrow-like protein 21
Refseq	XP_020553937.1	0.0	scarecrow-like protein 21
Swissprot	Q69VG1	1e-161	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A4D8ZBW2	0.0	A0A4D8ZBW2_SALSN; Uncharacterized protein
STRING	Migut.M01823.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3441	24	48

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]