PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100068630161

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 573aa MW: 64219.7 Da PI: 5.6722

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100068630161	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.1	2.8e-11	59	94	3	37
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee.kvke 37 +k+ rr+++NReAAr+sR+RKka++++Le k k Ote100068630161\|100068630161 59 TDKVMRRLAQNREAARKSRLRKKAYVQQLESsKLKL 94 789**************************9624444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-8	53	100	No hit	No description
SMART	SM00338	3.9E-4	57	117	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.841	59	101	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.7E-8	59	95	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.38E-7	61	96	No hit	No description
PROSITE pattern	PS00036	0	64	79	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-27	147	222	IPR025422	Transcription factor TGA like domain
SuperFamily	SSF49899	1.44E-22	363	544	IPR013320	Concanavalin A-like lectin/glucanase domain
Pfam	PF00139	6.8E-21	443	545	IPR001220	Legume lectin domain
Gene3D	G3DSA:2.60.120.200	2.8E-23	445	544	IPR013320	Concanavalin A-like lectin/glucanase domain
PROSITE pattern	PS00307	0	447	453	IPR019825	Legume lectin, beta chain, Mn/Ca-binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0030246	Molecular Function	carbohydrate binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MGIYEPIHQM SMWGDFKGLD ASSPIILEVD PKLDNQSEDT SHGTVGPSNK YDQETGKPTD 60 KVMRRLAQNR EAARKSRLRK KAYVQQLESS KLKLLQLEQE LGRARQQGLY SGSALDASPL 120 GYAGSTNPGI ATFEMEYGHW VEEQDRQISD LRNALNTETG ELELRIFVDG GMRHYFDLFT 180 MKATAAKADV FYLMSGMWKT SAERFFFWIG GFRPSELLKV LLPHLEPLSE QQRLDLGNLA 240 QSCQQAEDAL SQGMEKLQQF LGEAIAKQLG EGNYLPQIGA AIEKLEALVR FVGQADHLRQ 300 ETLQQISRIL TTRQAARGLL ALGEYFQRLR ALSSLWSSRP CDSSKLCRAE KIDRPDDISF 360 EILELIGDAT IGLGALQLTP ASSSRLPMHP VLNSGRVLXX XXXXXXXXXX XKLWEQGRGI 420 NGGASVVASF NTSFLFTLFR VEDSKLVAVE FDTFKDDELD DPDGNHVGIG FNSVRSIKTE 480 SLTHYNITIN STGTHFYNSW VDYDGLNRVI SVFIAEQAQM EGATPPKPRS PVLSAPLNLA 540 RHLQCLFRLL GFHRLWQCLE CCAEVEFDCP TLL

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MGIYEPIHQM SMWGDFKGLD ASSPIILEVD PKLDNQSEDT SHGTVGPSNK YDQETGKPTD  60
KVMRRLAQNR EAARKSRLRK KAYVQQLESS KLKLLQLEQE LGRARQQGLY SGSALDASPL  120
GYAGSTNPGI ATFEMEYGHW VEEQDRQISD LRNALNTETG ELELRIFVDG GMRHYFDLFT  180
MKATAAKADV FYLMSGMWKT SAERFFFWIG GFRPSELLKV LLPHLEPLSE QQRLDLGNLA  240
QSCQQAEDAL SQGMEKLQQF LGEAIAKQLG EGNYLPQIGA AIEKLEALVR FVGQADHLRQ  300
ETLQQISRIL TTRQAARGLL ALGEYFQRLR ALSSLWSSRP CDSSKLCRAE KIDRPDDISF  360
EILELIGDAT IGLGALQLTP ASSSRLPMHP VLNSGRVLXX XXXXXXXXXX XKLWEQGRGI  420
NGGASVVASF NTSFLFTLFR VEDSKLVAVE FDTFKDDELD DPDGNHVGIG FNSVRSIKTE  480
SLTHYNITIN STGTHFYNSW VDYDGLNRVI SVFIAEQAQM EGATPPKPRS PVLSAPLNLA  540
RHLQCLFRLL GFHRLWQCLE CCAEVEFDCP TLL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097616.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3
Swissprot	P14232	1e-170	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A4D8ZE64	0.0	A0A4D8ZE64_SALSN; Transcription factor TGA
STRING	Migut.L00088.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]