PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100068500161

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 535aa MW: 60092 Da PI: 7.413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100068500161	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.3e-13	350	396	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h + ErrRR+++N++f+ Lr+llP+ +K +Ka++L ++eY++sL Ote100068500161\|100068500161 350 MHHVISERRRREKLNESFHILRSLLPPG-----TKKDKASVLSSTTEYLSSL 396 57999*******************97.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.075	347	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-11	349	401	No hit	No description
SuperFamily	SSF47459	4.84E-16	349	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-15	351	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-11	351	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.8E-15	353	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MDSIFHLEDG DRAAFLEKMM QAFGCVYVCL KYYIPSYNCL KGLDGIYHER STSQLTLARR 60 LFDVYRESSS SPDLGGIPGL AFASNNPCMK LELHEFQRLV FDEIQRQFYQ VSLPFLTNIF 120 KNNKINTNFD ILIVQEAGIK TVVLMGCATG EIELGMSHDH PQTQVDLETE MRNFIHNNFP 180 HHTDPNMPYS SSSSSLRSLS VDSPEYPPIF NIPSVSRPPF APVGESLLEE ALRSAPPPPP 240 ATTHDQAILA LNQIRNAQFP RIESEEATMA KAILAVLCSP SSSSSHQNQN QTTTSAFRRY 300 RPSSAPRINA GVNQKQSKFK RAVLFFRNLN LRIRQEYSQT QGNRPTATQM HHVISERRRR 360 EKLNESFHIL RSLLPPGTKK DKASVLSSTT EYLSSLKSRV AELTKRDQLL ESELDSLRKP 420 QFGTDLAESS ASSAERVYVE IVQVSSSSPP AAEARLLELR VTVRGGISML DLLTRFIELL 480 KRQTNASLSS VESNTRMLGS VEVHAVIMRL RVEGDEFDES GFREAVTRVV DDSTN

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MDSIFHLEDG DRAAFLEKMM QAFGCVYVCL KYYIPSYNCL KGLDGIYHER STSQLTLARR  60
LFDVYRESSS SPDLGGIPGL AFASNNPCMK LELHEFQRLV FDEIQRQFYQ VSLPFLTNIF  120
KNNKINTNFD ILIVQEAGIK TVVLMGCATG EIELGMSHDH PQTQVDLETE MRNFIHNNFP  180
HHTDPNMPYS SSSSSLRSLS VDSPEYPPIF NIPSVSRPPF APVGESLLEE ALRSAPPPPP  240
ATTHDQAILA LNQIRNAQFP RIESEEATMA KAILAVLCSP SSSSSHQNQN QTTTSAFRRY  300
RPSSAPRINA GVNQKQSKFK RAVLFFRNLN LRIRQEYSQT QGNRPTATQM HHVISERRRR  360
EKLNESFHIL RSLLPPGTKK DKASVLSSTT EYLSSLKSRV AELTKRDQLL ESELDSLRKP  420
QFGTDLAESS ASSAERVYVE IVQVSSSSPP AAEARLLELR VTVRGGISML DLLTRFIELL  480
KRQTNASLSS VESNTRMLGS VEVHAVIMRL RVEGDEFDES GFREAVTRVV DDSTN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094007.1	1e-170	putative transcription factor bHLH041
TrEMBL	A0A0H3YC34	0.0	A0A0H3YC34_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.J00583.1.p	1e-145	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4567	23	39