PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100068140191
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CPP
Protein Properties Length: 722aa    MW: 79348.1 Da    PI: 5.8159
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100068140191genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.77.4e-16435473240
                           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                   ++k+CnCk+skClk+YCeCfaag++C e C C dC+Nk 
  Ote100068140191|100068140191 435 SCKRCNCKRSKCLKLYCECFAAGVYCVEPCACMDCFNKP 473
                                   689**********************************96 PP
2TCR51.42.1e-16520558139
                           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                   ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Ote100068140191|100068140191 520 RHKRGCNCKKSGCLKKYCECYQGGVGCSVNCRCEGCKNA 558
                                   589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.4E-18434475IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.323435560IPR005172CRC domain
PfamPF036381.4E-11437472IPR005172CRC domain
SMARTSM011147.6E-18520561IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.5E-12522558IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MDTPERSKTS QIAASISKFE DSPVFNFLNS LSPIKLVKST HITQTINPLS FASIPSVFTS  60
PHVSSLRKNR FLRRHQFSDP SKPEFSSDDG IKVDTNKMND AAKQLDEQKE IADGEVAADS  120
SYDCSKFVVD FDKDYECASP NFNLRPGCSL EAKDNIGVAL ISSQRGEVNI DVATQIDQNK  180
EATSCDWEHM ISDTSDLLVF ESPNNRDSYN DLSIKHDMQS LCLICTDSGK QVVEGNEAEN  240
SSTHHGEENE MDNAAGSSFS NPDENVDYEN LEFYRGMRRR CLVFEMGGAR RKHFEENSDS  300
DSSVWLHSSD ENTHSKSNDQ KLVSEGRGNE PSRCLVPGIG LHLNALATTP KNHNIVNPDL  360
SASARLLIGP SSVINIQPSS NSQRLSDRET VEMENAVLPV EDACPSSGYI VNEEINQGSP  420
KKKRRRSEQA GEGESCKRCN CKRSKCLKLY CECFAAGVYC VEPCACMDCF NKPIHEDTVL  480
ATRKQIESRN PLAFAPKVIR GSDSPSEVGD DSSKTPASAR HKRGCNCKKS GCLKKYCECY  540
QGGVGCSVNC RCEGCKNAFG RKDGIEAEAE EDEANAADRS FQKSTENELE QNTDSAPPAT  600
PLRGGRPSAQ LPFSSKKKPP RSSFPSIASS SLSALSSFLP RQGFGKSSFF RPPPKFDEQF  660
EAIREDEIPE FLQGGSPESG GIKLSSPKLK RVSPPHNADG LRSSRKLILQ SIPSFPSLTQ  720
NQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1943755712120Protein lin-54 homolog
5fd3_B6e-1943755712120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090684.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2
TrEMBLA0A4D8Y2U90.0A0A4D8Y2U9_SALSN; Uncharacterized protein
STRINGMigut.G00370.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345