PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100067460051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 389aa    MW: 43471.9 Da    PI: 6.7606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100067460051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51161501128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrk 74 
                                   + pGfrFhPtdeelv +yL +k+++k+l++ e ik++diyk++PwdLp+        ++++ekewyf+++rd+ky++++r+
  Ote100067460051|100067460051  16 MLPGFRFHPTDEELVGFYLSRKIQQKPLSI-ELIKQIDIYKFDPWDLPNmlvleseLATNGEKEWYFYCPRDRKYRNSTRP 95 
                                   579***************************.89***************658888764455889****************** PP

                           NAM  75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   nr+t +g+Wkatg+d++++s+ + + +glkk+Lvfykg+a kg ktdW+mhe+rl
  Ote100067460051|100067460051  96 NRVTGAGFWKATGTDRPIYSSeNAKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRL 150
                                   ********************856667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5615178IPR003441NAC domain
PROSITE profilePS5100556.27216178IPR003441NAC domain
PfamPF023653.7E-2518150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEGRNESGGD KFDDVMLPGF RFHPTDEELV GFYLSRKIQQ KPLSIELIKQ IDIYKFDPWD  60
LPNMLVLESE LATNGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSENAK  120
CIGLKKSLVF YKGKAAKGIK TDWMMHEFRL PSLSNSTRCL DKNIPITEAW ALCRIFKKPN  180
SSTKRALSHS WVSPLLDTTK FDNINSSNNV PISCSTPTTA NKTNSSLQFG FCNDMQHSSF  240
TSFSAPYFPL CGPTHAMGDT ISASVNEDHF KPSYTFSSMK ASMPASRCVV NDATSLLLDM  300
STSILGDYAR SSVNMDLSAS TAPADLQRDL EQGEAVKGQN VGEIDDEWGD IVRSSMEFPY  360
SSTSNLMWGS SSPCPSDLST SYSTNKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-551818419171NO APICAL MERISTEM PROTEIN
1ut4_B1e-551818419171NO APICAL MERISTEM PROTEIN
1ut7_A1e-551818419171NO APICAL MERISTEM PROTEIN
1ut7_B1e-551818419171NO APICAL MERISTEM PROTEIN
3swm_A2e-551818422174NAC domain-containing protein 19
3swm_B2e-551818422174NAC domain-containing protein 19
3swm_C2e-551818422174NAC domain-containing protein 19
3swm_D2e-551818422174NAC domain-containing protein 19
3swp_A2e-551818422174NAC domain-containing protein 19
3swp_B2e-551818422174NAC domain-containing protein 19
3swp_C2e-551818422174NAC domain-containing protein 19
3swp_D2e-551818422174NAC domain-containing protein 19
4dul_A1e-551818419171NAC domain-containing protein 19
4dul_B1e-551818419171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071000.11e-158putative NAC domain-containing protein 94
SwissprotQ9ZVH03e-96FEZ_ARATH; Protein FEZ
TrEMBLA0A2G9I2U71e-141A0A2G9I2U7_9LAMI; Uncharacterized protein
TrEMBLA5C0Y31e-140A5C0Y3_VITVI; Uncharacterized protein
STRINGVIT_01s0026g02360.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]