PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100067460051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 389aa MW: 43471.9 Da PI: 6.7606 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.8 | 1.5e-51 | 16 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrk 74 + pGfrFhPtdeelv +yL +k+++k+l++ e ik++diyk++PwdLp+ ++++ekewyf+++rd+ky++++r+ Ote100067460051|100067460051 16 MLPGFRFHPTDEELVGFYLSRKIQQKPLSI-ELIKQIDIYKFDPWDLPNmlvleseLATNGEKEWYFYCPRDRKYRNSTRP 95 579***************************.89***************658888764455889****************** PP NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 nr+t +g+Wkatg+d++++s+ + + +glkk+Lvfykg+a kg ktdW+mhe+rl Ote100067460051|100067460051 96 NRVTGAGFWKATGTDRPIYSSeNAKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRL 150 ********************856667***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-56 | 15 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.272 | 16 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-25 | 18 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 389 aa Download sequence Send to blast |
MEGRNESGGD KFDDVMLPGF RFHPTDEELV GFYLSRKIQQ KPLSIELIKQ IDIYKFDPWD 60 LPNMLVLESE LATNGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSENAK 120 CIGLKKSLVF YKGKAAKGIK TDWMMHEFRL PSLSNSTRCL DKNIPITEAW ALCRIFKKPN 180 SSTKRALSHS WVSPLLDTTK FDNINSSNNV PISCSTPTTA NKTNSSLQFG FCNDMQHSSF 240 TSFSAPYFPL CGPTHAMGDT ISASVNEDHF KPSYTFSSMK ASMPASRCVV NDATSLLLDM 300 STSILGDYAR SSVNMDLSAS TAPADLQRDL EQGEAVKGQN VGEIDDEWGD IVRSSMEFPY 360 SSTSNLMWGS SSPCPSDLST SYSTNKCYT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 18 | 184 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 18 | 184 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 18 | 184 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 18 | 184 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 18 | 184 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 18 | 184 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 18 | 184 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 18 | 184 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 18 | 184 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 18 | 184 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 18 | 184 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 18 | 184 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-55 | 18 | 184 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 18 | 184 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071000.1 | 1e-158 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 3e-96 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A2G9I2U7 | 1e-141 | A0A2G9I2U7_9LAMI; Uncharacterized protein | ||||
TrEMBL | A5C0Y3 | 1e-140 | A5C0Y3_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0026g02360.t01 | 1e-140 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 |
Publications ? help Back to Top | |||
---|---|---|---|
|