PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100067030151
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SRS
Protein Properties Length: 296aa    MW: 31689.2 Da    PI: 7.3588
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100067030151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702185.91.6e-57912343152
                        DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkq 83 
                                    g++sCqdCGnqakkdC+h+RCRtCCksrgf+C thvkstWvpaa                  ++ ++     +++ s+++
  Ote100067030151|100067030151  91 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFECRTHVKSTWVPAAXXXXXXXXXXXXXXXXXGKRLREM----NDNPSSSS 167
                                   5789*****************************************998875555554443333222222....22223445 PP

                        DUF702  84 salsstklssaeskkeletsslPeevsseavfrcvrvs.svddgeeelaYqtavsigGhvfkGiLydqGl 152
                                   + l +t+++++   + le+ ++P+ev +eavfrcvrvs +vdd+ +++aYqtav+i GhvfkGiLydqG 
  Ote100067030151|100067030151 168 NPLVCTRIPTT---SGLEVGNFPAEVTAEAVFRCVRVSgAVDDAVDQYAYQTAVNICGHVFKGILYDQGG 234
                                   55666666665...57899******************8479***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.3E-5193234IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.6E-2695135IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.4E-25186233IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAGFFSLGGG AASRPTTDQP TTTAHSEINP ESWFLYRNED IPYKGFELWQ PQDLGGRGGX  60
XXXXXXXXXX XXXXXDHARS GFLMMRSGGG GGGISCQDCG NQAKKDCQHM RCRTCCKSRG  120
FECRTHVKST WVPAAXXXXX XXXXXXXXXX XXGKRLREMN DNPSSSSNPL VCTRIPTTSG  180
LEVGNFPAEV TAEAVFRCVR VSGAVDDAVD QYAYQTAVNI CGHVFKGILY DQGGAAAAET  240
SSGGGSVTAA AQHLNLITGT SATAGNGRDF ADASPFPPPI NSFIAGTQFF PLPPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090405.14e-98protein SHI RELATED SEQUENCE 1-like
SwissprotK4B6C92e-74EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A4D9AL911e-102A0A4D9AL91_SALSN; Uncharacterized protein
STRINGEOX909422e-87(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]