PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100066420021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 319aa    MW: 35316.7 Da    PI: 8.2532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100066420021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000181822201255
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Ote100066420021|100066420021 182 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 220
                                   6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.846170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-11180233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.68E-6180224No hitNo description
Gene3DG3DSA:4.10.280.103.3E-8184227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MMAGNPNWWS MNGMHPQPHP HFATSNSNPS PPSXXXXXXX XXXDLPVRSW SQLLLGEEER  60
FGAGLFQQQK KLENWEDQVL NLNPRINPVV DVKQESPTQI YGQRADEGFQ TNIASAWPRH  120
HQLSSPTSCI TTQSNSILNF SSSQRKNNQH HSSDQCNSTG NGGVSKKARV QQSSAQPALK  180
VRKEKLGDRI TALHQLVSPF GKTDTASVLS EAIGYIRFLQ SQIEALSSPY MRNAAGNTVV  240
HHQHSVQERN CLFPEEPSQF LNDITMDGRG TSKQDSQGRS ALKDLRSRGL CLVPISCTQH  300
VGNDNSADYW APAAFGGGF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072388.11e-143transcription factor bHLH68 isoform X2
SwissprotQ8S3D13e-69BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A4D8YLC91e-141A0A4D8YLC9_SALSN; Uncharacterized protein
STRINGMigut.I00932.1.p1e-111(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]