PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100066230061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 605aa MW: 67130.9 Da PI: 8.3036

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100066230061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3e-07	472	519	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d+v ++G g W++I + + +Rt ++k++w+++l Ote100066230061\|100066230061 472 WTISEVGKLIDGVSEFGVGKWSRIKKLFFsasAHRTSVDLKDKWRNLL 519 9999999***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.946	464	523	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-12	465	521	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.43E-15	466	521	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-7	468	521	IPR001005	SANT/Myb domain
CDD	cd11660	5.53E-19	472	520	No hit	No description
Pfam	PF13921	3.6E-5	472	521	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MENGHPSIGL EDGTIDVERL LVEPQDEHLS MDSVISFNEK IPKSLMSAED VSRSSGGLDT 60 GIAQEGKDIL NGEVLNAMPS EVQVGYFRLE NDLCSMGEEY LLESITNLDY GSSEGLHASA 120 SDSQVQVFTA VSDTECRSDL FRTDNLRECQ IDLFNVGSSK LSDTPHHHEC ETLSGQNPAT 180 SPGSCTLQNS VKSQNSSSSS CQDVLSDEND GRFSQAGEMF CSSNTERSND TELTVQDGAT 240 GVIKLEETLI TSVQVSSTDI LPTQKRSRKP TQRYICELAD PVGTYPKRRR EVSSSSIKGK 300 SLGVKNHKSQ IMGPKAVRES PEEFSVIAIQ VPFGSLANKE GSDRHAHNIV PHVDCRNSNT 360 KSKGKFVSLQ DQSKRENCIT AVDLKKRSDC IRGQRKTEVC FMEGQVKKKY VHATATNLKK 420 RNECNIGVIG KKRDNCFAAD CRRAMHQKMR DGSLTSESSE ETSGRRKHHR LWTISEVGKL 480 IDGVSEFGVG KWSRIKKLFF SASAHRTSVD LKDKWRNLLK ASGVLEQGNQ QGGKKRNMAW 540 RPLPKSILRR VCELAAMYPY PKGNNKKKKT PNISCDALDT STDMTLTRYR RILXXXXXXX 600 XXXGN

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MENGHPSIGL EDGTIDVERL LVEPQDEHLS MDSVISFNEK IPKSLMSAED VSRSSGGLDT  60
GIAQEGKDIL NGEVLNAMPS EVQVGYFRLE NDLCSMGEEY LLESITNLDY GSSEGLHASA  120
SDSQVQVFTA VSDTECRSDL FRTDNLRECQ IDLFNVGSSK LSDTPHHHEC ETLSGQNPAT  180
SPGSCTLQNS VKSQNSSSSS CQDVLSDEND GRFSQAGEMF CSSNTERSND TELTVQDGAT  240
GVIKLEETLI TSVQVSSTDI LPTQKRSRKP TQRYICELAD PVGTYPKRRR EVSSSSIKGK  300
SLGVKNHKSQ IMGPKAVRES PEEFSVIAIQ VPFGSLANKE GSDRHAHNIV PHVDCRNSNT  360
KSKGKFVSLQ DQSKRENCIT AVDLKKRSDC IRGQRKTEVC FMEGQVKKKY VHATATNLKK  420
RNECNIGVIG KKRDNCFAAD CRRAMHQKMR DGSLTSESSE ETSGRRKHHR LWTISEVGKL  480
IDGVSEFGVG KWSRIKKLFF SASAHRTSVD LKDKWRNLLK ASGVLEQGNQ QGGKKRNMAW  540
RPLPKSILRR VCELAAMYPY PKGNNKKKKT PNISCDALDT STDMTLTRYR RILXXXXXXX  600
XXXGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077333.1	0.0	uncharacterized protein LOC105161373 isoform X1
TrEMBL	A0A4D8ZZS3	0.0	A0A4D8ZZS3_SALSN; Uncharacterized protein
STRING	Migut.L01689.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9155	17	23