PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100065760051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 167aa MW: 18804.4 Da PI: 8.6001 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.2 | 7e-12 | 43 | 94 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +++++G g W+tI + R+ ++k++w+++ Ote100065760051|100065760051 43 KQKWTSEEEAALKAGIQKYGIGKWSTILKDPEfstflRSRSNVDLKDKWRNL 94 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-16 | 40 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-6 | 42 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-7 | 43 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-15 | 43 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.979 | 43 | 95 | IPR017877 | Myb-like domain |
CDD | cd11660 | 2.70E-21 | 44 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MCYMDCLLFN VRILQLERWN GNLHCSLGDC CERFGVYVMG APKQKWTSEE EAALKAGIQK 60 YGIGKWSTIL KDPEFSTFLR SRSNVDLKDK WRNLNCMANG LGSRHRARVP SKNHQLTPKQ 120 DEDTKASGMV VEKETDVLSA STLATSSETS HDAGSKKKIS RLEDMLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854030.1 | 1e-66 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_012854037.1 | 1e-66 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_012854044.1 | 1e-66 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Swissprot | Q8VWK4 | 2e-32 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A2G9H8J9 | 6e-66 | A0A2G9H8J9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00343.1.p | 5e-66 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5122 | 22 | 35 |
Publications ? help Back to Top | |||
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