PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100065340111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 284aa MW: 31270 Da PI: 9.4449

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100065340111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.8e-09	38	64	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 hn E+rRR+riN+++ L+ l+P++ Ote100065340111\|100065340111 38 VHNLSEKRRRSRINEKMKALQNLIPNS 64 6************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-9	31	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-10	31	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.407	34	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.90E-6	37	68	No hit	No description
Pfam	PF00010	5.8E-7	38	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MKRMNVAMRE AVEALVSETA AKSAPPRCSS KRSRAAEVHN LSEKRRRSRI NEKMKALQNL 60 IPNSNKVRML IDGQSLDARR SYRVPQAAPA PSAGKSVAAC FSSHFLYLSL AKLIGSCMLT 120 MRKGLSLYPL CLPGMLHQPN QVSQTRLDVY GTDKYLNVDA TKEMGMILNV SADSVLRIPE 180 NCVKQEHVSD FSSINDKTSA DVESSLLPHQ FGAFQLCKSS KKEKLLPCLP LVEDRQQGAK 240 VTSSIPDEAQ TSRLKDDILE SCVAGAADIL LTNYVNNQAL SHHN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099122.1	9e-64	transcription factor SPATULA
TrEMBL	A0A0H3YC58	1e-86	A0A0H3YC58_SALMI; Basic helix-loop-helix transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9850	22	27