PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100064320011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C3H

Protein Properties

Length: 314aa MW: 35669 Da PI: 7.5022

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100064320011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.7e-09	211	230	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tGtC++G+rC+++H Ote100064320011\|100064320011 211 CPFHLKTGTCRFGSRCSRIH 230 *******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.094	205	233	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-6	210	230	IPR000571	Zinc finger, CCCH-type
PRINTS	PR01848	2.0E-12	211	230	IPR009145	U2 auxiliary factor small subunit
PRINTS	PR01848	2.0E-12	230	250	IPR009145	U2 auxiliary factor small subunit

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000398	Biological Process	mRNA splicing, via spliceosome
GO:0089701	Cellular Component	U2AF
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MVTAVECAAA NRKERRKASX XXXXXXXXXX XAEMARRDEE ARLNDPEEQQ RLQAXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXLLLKQNQ GVHEDEVDED 120 GWEYVEVGPP EIIWQGNEII LKKKKIRVKK EDTGRQILKE DPNRPTSNPL PPQSEAFADH 180 KNASNLSAQQ LLETVAQETP NFGTEQDKAH CPFHLKTGTC RFGSRCSRIH FYPDKSCTLL 240 IKNMYNGPGL AWEHDEGLEG RATSGRKYGL RTPYHPGAPG PAGICSMPIF SSRRPVPLNW 300 PASPQPSVST FNSY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9SY74	7e-66	C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBL	A0A4D9C1V5	6e-81	A0A4D9C1V5_SALSN; Splicing factor U2AF 35 kDa subunit

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8189	6	6

Publications ? help Back to Top
Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W Pre-mRNA splicing in higher plants. Trends Plant Sci., 2000. 5(4): p. 160-7 [PMID:10740297] Domon C,Lorković ZJ,Valcárcel J,Filipowicz W Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants. J. Biol. Chem., 1998. 273(51): p. 34603-10 [PMID:9852132]