PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100064310021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 699aa    MW: 76640.6 Da    PI: 6.1151
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100064310021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-23121219196
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L
  Ote100064310021|100064310021 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKL 199
                                   89****************************996555555..89************************************** PP

                                   -TT-EEEEEE-SSSEE..EEEE CS
                            B3  75 kegDfvvFkldgrsefelvvkv 96 
                                    +gD++vF+  + +++ l+v++
  Ote100064310021|100064310021 200 VAGDSIVFM--RAENGDLCVGI 219
                                   *********..34788889987 PP
2Auxin_resp112.53.9e-37285368183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 
                                   aa+ a+++ +F+vvY+Prast+eF+vk++ v+ a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr
  Ote100064310021|100064310021 285 AATLAASGRAFDVVYYPRASTPEFCVKASLVKVAMQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPDSPWR 365
                                   688999*************************************************************************** PP

                    Auxin_resp  81 sLk 83 
                                   +L+
  Ote100064310021|100064310021 366 LLQ 368
                                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-36112220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-28116220IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-20120219No hitNo description
PROSITE profilePS5086312.534121223IPR003340B3 DNA binding domain
SMARTSM010191.0E-19121223IPR003340B3 DNA binding domain
PfamPF023622.4E-21121219IPR003340B3 DNA binding domain
PfamPF065071.8E-32285368IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MITFMESKEK MKETERCLDS QLWHACAGSM VQMPTVNSKV FYFPQGHSEH SCGNVDFRNC  60
PRIPAYIPCR VCAINFMADP ETDEVFAKLR LVPTSGNELE AEDDGGGVGI SSENQDKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFMRA ENGDLCVGIX XXXXXXXXXX IGGGAEITTG  240
WNPASGGNSI VPYGGYSSFL RDDENKLNRN TNGRGRVNAE DVVEAATLAA SGRAFDVVYY  300
PRASTPEFCV KASLVKVAMQ IRWCSGMRFK MAFETEDSSR ISWFMGTISS VQVADPIRWP  360
DSPWRLLQIL ASEVCIDTMA LQVAWDEPDL LQNVKRVSPW LVELVANMPA IHLSPFAPPR  420
KKLRLPQHSD FPVDAHIPLP PFGIGSSNPL GCLPNTTPAG MQGARHAQYG CLSLPNLQLN  480
KLHSSLFPVG FLPLDRAPTG PSSPLVPKPG INDNISCLLT MGSSPQGSKK SDNGSKXXXX  540
XXXXXLFGKA IMPEKQISVS CSTDTVSSDG NAAADKTGNA SDASGSALNQ NEPPERSSCQ  600
SELMEVXXXX XXXXXXXXXM ESEDVGRTLD LSSLASYEEL YRKLGDMFGI GVSEMLNRVL  660
YRDATGRFKQ VGDQPFSNFM KTTRRLTILA DSSVDNVEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-72340332388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094651.10.0auxin response factor 18
RefseqXP_011094652.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8T50.0A0A191T8T5_SALMI; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]