PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100063370101
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SRS
Protein Properties Length: 145aa    MW: 14975.6 Da    PI: 3.8465
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100063370101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70254.83.6e-173266120154
                        DUF702 120 vssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                   vs++dd+e+++aYqtav+i+GhvfkGiLydqG+e+
  Ote100063370101|100063370101  32 VSAIDDAEDQYAYQTAVNISGHVFKGILYDQGTES 66 
                                   89******************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016244.2E-183263IPR006511Lateral Root Primordium type 1, C-terminal
PfamPF051421.1E-143265IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MRSSGGGGIS CQDCGNXXXX XLLTYAVPDL LVSAIDDAED QYAYQTAVNI SGHVFKGILY  60
DQGTESQYAA AGETSSGGGS VSVGVQQLNL ITGXXXXXXX XXXXXXXXGG GGGGGSPSPY  120
LDPSLFPAPL NSFMAGTQFF PPPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090405.12e-37protein SHI RELATED SEQUENCE 1-like
SwissprotK4B6C92e-27EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A4D9AWL56e-40A0A4D9AWL5_SALSN; Uncharacterized protein
STRINGEOX909424e-30(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1829424
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]