PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100062960131

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Protein Properties

Length: 226aa MW: 25951.6 Da PI: 8.8851

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100062960131	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48	2.2e-15	123	200	1	84
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k +++s+v+ +l lp +f++++ +++++t+ l de+ ++ e k+ ++++ l++GW++F+ +++L +gD +v Ote100062960131\|100062960131 123 FVKPMLQSHVTGGFWLGLPQQFCKANL--PNRDVTIDLVDEDDQVSETKY--LAHKSG--LSAGWRGFAIDHELVDGDALV 197 89*******************9995..35889************..555555..9****************** PP EEE CS B3 82 Fkl 84 F++ Ote100062960131\|100062960131 198 FHY 200 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.06E-19	117	201	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.5E-16	117	201	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.36E-23	121	200	No hit	No description
SMART	SM01019	7.1E-16	123	214	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-13	123	201	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.925	123	216	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVVAAYEESR KKRLEENKKR MEELNLNKLS QALHTPKSSP MKKVKPKTPK QPVDPSAIRR 60 SSRVKEMPPR SYKEVAVEAM GKPRSYKRRD LLNRVYAGDE ERQYVIQRAE DLQSGLDQDI 120 PSFVKPMLQS HVTGGFWLGL PQQFCKANLP NRDVTIDLVD EDDQVSETKY LAHKSGLSAG 180 WRGFAIDHEL VDGDALVFHY LILHWKSFQI VLEEGKAVMQ QAFEDD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088274.1	1e-110	B3 domain-containing protein At3g19184 isoform X2
Swissprot	Q1G3M3	5e-74	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A4D9C1F3	1e-119	A0A4D9C1F3_SALSN; Uncharacterized protein
STRING	XP_009612757.1	1e-96	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]