PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100062870001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 757aa MW: 86011.4 Da PI: 7.0496 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 375.6 | 6.2e-115 | 384 | 755 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL++cA+av+++d ++a++lL++++ ++sp g+ qRla+yf+ +L+ r+a+++s++ kal ++t ++ l+a+ Ote100062870001|100062870001 384 LRTLLINCAQAVAADDRRNASELLKQIRLHSSPFGEGSQRLAHYFADGLEVRMAGTGSQIHKALINKKTI---AADYLKAY 461 6789************************************************************888887...89****** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 ++ sP+ k+s+++ N++ ++ ++ rvH+iDf+i +G+QWp+L+q +a+Rp+gpp+lRiTg++ p++g +e++ee Ote100062870001|100062870001 462 YTYLASSPFRKISNFVSNKTTMNTSLKAARVHVIDFGILYGFQWPTLIQRIAERPGGPPKLRITGIDFPQAGfrPAERIEE 542 ***********************************************************************9********* PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 tg+rLa++A++++vpfe+n+ +ak++e++++e+L++++gE ++Vn++++ ++llde+v es+r+ vL+lvk+++P+++++ Ote100062870001|100062870001 543 TGRRLARYARTFNVPFEYNA-IAKKWETIKIEDLKIEKGEFVVVNCMYRAKNLLDETVVAESARTMVLNLVKKINPDLFIH 622 ********************.7*********************************************************** PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + ++++ F++rf e l ++salfd+le+++p ++ er+ +Er ++gre+ nv+aceg er+er et+++W+ r +a Ote100062870001|100062870001 623 GIVNGAYGAPFFVTRFREVLFHFSALFDMLETNIPGDKPERMLIERDIFGREALNVIACEGWERVERPETYKQWQVRHLRA 703 ********************************************************************************* PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 GF +vp++ + +k a + +r+++ + + ++e++++l++gWk+r ++++S+W+ Ote100062870001|100062870001 704 GFLQVPIERELMKRAIYKVRTFYHKDFVIDEDNQWLLMGWKGRVIYAISCWK 755 ***********************889*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.868 | 358 | 735 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-112 | 384 | 755 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MDPRFHGMLN SSTGVESENP SMAGYCDERI GNGGRFKISY PDDKVVNEHR NQDSSFQEHC 60 IGGVHLVLDQ PFSKGGGSLF SPFVDIEEDC DFSDAVLRYI DQILMEEDME EKTHMLQESL 120 DLQAKEKSFY EVLGKKYPPS PRPREVLGTV SREYVDDNPY VNCLNSTTSS SDGSGYLIDI 180 VDRSWVNNRM DHDASITDCG AACGASKSSI SSSNSFSNFV DGFSDSPISP LQIRDMYNES 240 QLVWSFRRGV DEASKLLPAG NNLALANQNS KEVEIEVRNS VEKQLPSGSR GKKNRSNVET 300 DLEEERSSKL PAVYAESDSD VPMEEFDDVL LHTLGEREKK FAAYREILQN ETGKRTQQNG 360 QIRRSSGGRG RSKKQNKKKE VIDLRTLLIN CAQAVAADDR RNASELLKQI RLHSSPFGEG 420 SQRLAHYFAD GLEVRMAGTG SQIHKALINK KTIAADYLKA YYTYLASSPF RKISNFVSNK 480 TTMNTSLKAA RVHVIDFGIL YGFQWPTLIQ RIAERPGGPP KLRITGIDFP QAGFRPAERI 540 EETGRRLARY ARTFNVPFEY NAIAKKWETI KIEDLKIEKG EFVVVNCMYR AKNLLDETVV 600 AESARTMVLN LVKKINPDLF IHGIVNGAYG APFFVTRFRE VLFHFSALFD MLETNIPGDK 660 PERMLIERDI FGREALNVIA CEGWERVERP ETYKQWQVRH LRAGFLQVPI ERELMKRAIY 720 KVRTFYHKDF VIDEDNQWLL MGWKGRVIYA ISCWKPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-49 | 373 | 756 | 7 | 379 | Protein SCARECROW |
5b3h_D | 2e-49 | 373 | 756 | 7 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077642.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A4D9AX60 | 0.0 | A0A4D9AX60_SALSN; Uncharacterized protein | ||||
STRING | Migut.L01952.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |