PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100062870001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 757aa    MW: 86011.4 Da    PI: 7.0496
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100062870001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.66.2e-1153847551374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL++cA+av+++d ++a++lL++++ ++sp g+  qRla+yf+ +L+ r+a+++s++ kal  ++t     ++ l+a+
  Ote100062870001|100062870001 384 LRTLLINCAQAVAADDRRNASELLKQIRLHSSPFGEGSQRLAHYFADGLEVRMAGTGSQIHKALINKKTI---AADYLKAY 461
                                   6789************************************************************888887...89****** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                    ++   sP+ k+s+++ N++ ++   ++ rvH+iDf+i +G+QWp+L+q +a+Rp+gpp+lRiTg++ p++g   +e++ee
  Ote100062870001|100062870001 462 YTYLASSPFRKISNFVSNKTTMNTSLKAARVHVIDFGILYGFQWPTLIQRIAERPGGPPKLRITGIDFPQAGfrPAERIEE 542
                                   ***********************************************************************9********* PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   tg+rLa++A++++vpfe+n+ +ak++e++++e+L++++gE ++Vn++++ ++llde+v  es+r+ vL+lvk+++P+++++
  Ote100062870001|100062870001 543 TGRRLARYARTFNVPFEYNA-IAKKWETIKIEDLKIEKGEFVVVNCMYRAKNLLDETVVAESARTMVLNLVKKINPDLFIH 622
                                   ********************.7*********************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                      +  ++++ F++rf e l ++salfd+le+++p ++ er+ +Er ++gre+ nv+aceg er+er et+++W+ r  +a
  Ote100062870001|100062870001 623 GIVNGAYGAPFFVTRFREVLFHFSALFDMLETNIPGDKPERMLIERDIFGREALNVIACEGWERVERPETYKQWQVRHLRA 703
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   GF +vp++ + +k a + +r+++ + + ++e++++l++gWk+r ++++S+W+
  Ote100062870001|100062870001 704 GFLQVPIERELMKRAIYKVRTFYHKDFVIDEDNQWLLMGWKGRVIYAISCWK 755
                                   ***********************889*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.868358735IPR005202Transcription factor GRAS
PfamPF035142.2E-112384755IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MDPRFHGMLN SSTGVESENP SMAGYCDERI GNGGRFKISY PDDKVVNEHR NQDSSFQEHC  60
IGGVHLVLDQ PFSKGGGSLF SPFVDIEEDC DFSDAVLRYI DQILMEEDME EKTHMLQESL  120
DLQAKEKSFY EVLGKKYPPS PRPREVLGTV SREYVDDNPY VNCLNSTTSS SDGSGYLIDI  180
VDRSWVNNRM DHDASITDCG AACGASKSSI SSSNSFSNFV DGFSDSPISP LQIRDMYNES  240
QLVWSFRRGV DEASKLLPAG NNLALANQNS KEVEIEVRNS VEKQLPSGSR GKKNRSNVET  300
DLEEERSSKL PAVYAESDSD VPMEEFDDVL LHTLGEREKK FAAYREILQN ETGKRTQQNG  360
QIRRSSGGRG RSKKQNKKKE VIDLRTLLIN CAQAVAADDR RNASELLKQI RLHSSPFGEG  420
SQRLAHYFAD GLEVRMAGTG SQIHKALINK KTIAADYLKA YYTYLASSPF RKISNFVSNK  480
TTMNTSLKAA RVHVIDFGIL YGFQWPTLIQ RIAERPGGPP KLRITGIDFP QAGFRPAERI  540
EETGRRLARY ARTFNVPFEY NAIAKKWETI KIEDLKIEKG EFVVVNCMYR AKNLLDETVV  600
AESARTMVLN LVKKINPDLF IHGIVNGAYG APFFVTRFRE VLFHFSALFD MLETNIPGDK  660
PERMLIERDI FGREALNVIA CEGWERVERP ETYKQWQVRH LRAGFLQVPI ERELMKRAIY  720
KVRTFYHKDF VIDEDNQWLL MGWKGRVIYA ISCWKPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-493737567379Protein SCARECROW
5b3h_D2e-493737567379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077642.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A4D9AX600.0A0A4D9AX60_SALSN; Uncharacterized protein
STRINGMigut.L01952.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191