PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100062800011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 9379.49 Da PI: 8.7566 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 1e-17 | 41 | 86 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W+++Ed +l +v ++G ++W++Iar ++ gR++k+c++rw + Ote100062800011|100062800011 41 RGPWSPQEDAILSGLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 86 89******************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.218 | 36 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.17E-16 | 38 | 89 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 40 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 40 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-17 | 41 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-14 | 43 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 89 aa Download sequence Send to blast |
MTAVPPNPND YATSNFGYSD VETTEEGGGI GAAAAAKGKV RGPWSPQEDA ILSGLVSKFG 60 ARNWSLIARG IPGRSGKSCR LRWCNQLDP |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076754.1 | 1e-31 | transcription factor MYB25 | ||||
Refseq | XP_023757203.1 | 8e-32 | transcription factor MYB1-like | ||||
Swissprot | Q42575 | 3e-22 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A4D8ZHE6 | 1e-30 | A0A4D8ZHE6_SALSN; Myb proto-oncogene protein, plant | ||||
STRING | XP_008233695.1 | 7e-29 | (Prunus mume) | ||||
STRING | GSMUA_Achr6P33470_001 | 2e-29 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16833 | 4 | 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|