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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Ote100062660011 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 291aa MW: 32688 Da PI: 10.0318 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ote100062660011 | genome | OteDB | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 326.5 | 7.8e-100 | 1 | 291 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..........maflqrdkal 67
mddd+ rn+gyyep lk +lglqlms+++erd+k+ re+ + + + ++a+++rd m++ rd+++
Ote100062660011|100062660011 1 MDDDSL--RNWGYYEPP--LKGHLGLQLMSTLTERDTKPflsgRENPV-MVSANGAFHPRDcvvteppvthMDY-VRDSWI 75
888866..9********..**********************9777777.99***********************.9***** PP
GAGA_bind 68 aernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekk 148
++ ++k+l++ + + ++++vl++++ +++ + l +++ e+++e e++ ++ke+
Ote100062660011|100062660011 76 NH--------REKFLHMFPGN--------PYSSVLPESSGSHHTMH-----LVQQQPEATKEXXXXXXXXMEEPVVKKENG 135
*9........78999999932........46677788777775444.....333333434444455555567788899999 PP
GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGG 229
kkr+ a++pk++kakk++k ++++k+++++++ +r+k+ kk++++v+ng+++D++++P+PvCsCtG+++qCY+WG+GG
Ote100062660011|100062660011 136 PAKKRAAAANPKTPKAKKPRK-TPAPKENSNPSG--QRAKTAKKNVEVVINGIDMDITGIPIPVCSCTGTPQQCYRWGCGG 213
9999****************9.778888888888..79******************************************* PP
GAGA_bind 230 WqSaCCttt......iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
WqSaCCt +yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy++ np+DL+++WAkHGtnkfvtir
Ote100062660011|100062660011 214 WQSACCTXXxxxxxxXXMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLATEGYNFVNPIDLRTYWAKHGTNKFVTIR 291
*******8622222257************************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MDDDSLRNWG YYEPPLKGHL GLQLMSTLTE RDTKPFLSGR ENPVMVSANG AFHPRDCVVT 60
EPPVTHMDYV RDSWINHREK FLHMFPGNPY SSVLPESSGS HHTMHLVQQQ PEATKEXXXX 120
XXXXMEEPVV KKENGPAKKR AAAANPKTPK AKKPRKTPAP KENSNPSGQR AKTAKKNVEV 180
VINGIDMDIT GIPIPVCSCT GTPQQCYRWG CGGWQSACCT XXXXXXXXXX MYPLPMSTKR 240
RGARIAGRKM SQGAFKKVLE KLATEGYNFV NPIDLRTYWA KHGTNKFVTI R
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
