PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100061790101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 224aa    MW: 24409.1 Da    PI: 6.5991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100061790101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.00011391771255
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Ote100061790101|100061790101 139 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 177
                                   6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.62E-7122181No hitNo description
PROSITE profilePS5088811.712127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-11137193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-9138192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MMAGNPNSWS MNGMHPQFVY GSNSSNSASS AASHHHLPSQ DFPLRGVGEE ERFGANVFHQ  60
QKKLENWEDQ VLNLNPRIHG GDVKQESAQI NYDEFHPNKT WPVMPVSSPT SCITSTNSGG  120
VSKKARVQHS SAQPALKVRK EKLGDRITAL HQLVSPFGKT DTASVLSEAI GYIRFLQSQI  180
EDDEQSGGEL RSRGLCLVPI SCTQNVGTDT GADYWAPSAL AGDF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548669.11e-81transcription factor bHLH68 isoform X7
SwissprotQ8S3D19e-35BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A4D8ZGW31e-85A0A4D8ZGW3_SALSN; Uncharacterized protein
STRINGMigut.I00932.1.p7e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]