PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100061770021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 306aa    MW: 34330 Da    PI: 9.1716
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100061770021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384.1e-124498153
                           AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkl 53
                                  s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k+
  Ote100061770021|100061770021 44 SVYRGVTRHRWTGRYEAHLWDkNCWNEtQNKKGRQGAYDDEEAAAHAYDLAALKK 98
                                  78*******************99999998988888*****************986 PP
2AP251.72.1e-16107158155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg+f t eeAa a++ a+ +++g
  Ote100061770021|100061770021 107 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFATQEEAATAYDMAAIEYRG 158
                                   89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-104499IPR016177DNA-binding domain
PfamPF008479.9E-84498IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-84597IPR001471AP2/ERF domain
PROSITE profilePS5103214.3814597IPR001471AP2/ERF domain
SMARTSM003805.7E-545100IPR001471AP2/ERF domain
PRINTSPR003673.1E-64657IPR001471AP2/ERF domain
CDDcd000181.47E-24107168No hitNo description
PfamPF008476.8E-12107158IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-18107168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-18108167IPR001471AP2/ERF domain
PROSITE profilePS5103218.36108166IPR001471AP2/ERF domain
SMARTSM003803.3E-25108172IPR001471AP2/ERF domain
PRINTSPR003673.1E-6148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVRSCKQKKT TSSNNSNSAV DIGINKSTRT RKSIPRESPP QRSSVYRGVT RHRWTGRYEA  60
HLWDKNCWNE TQNKKGRQGA YDDEEAAAHA YDLAALKKSS GFSRGVSKYR GVARHHHNGR  120
WEARIGRVFG NKYLYLGTFA TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKCFPPLQNK  180
PKIPKPIANG VKESNSTQNP NQEISEGDFL NHHQEGTSPT QTAMLAESDA TSSALGILLQ  240
SSKLKEMLEK TSIKNPSSPP RSSFPDDIQT SFDIQDSSNF AEEHGIVFGE YDSFASPMFQ  300
YELETN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-133AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-133AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN47e-84AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0G2SJE61e-135A0A0G2SJE6_SALMI; AP2/EREBP Transcription Factors
STRINGcassava4.1_025233m1e-124(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]