PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100061460011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 280aa MW: 31365.8 Da PI: 10.0999

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100061460011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.4	2.6e-11	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ ++k++G g W+tI + R+ ++k++w+++ Ote100061460011\|100061460011 5 KQKWTSEEEVALKAGIKKYGIGKWSTILKDPEfstvlRSRSNVDLKDKWRNL 56 79************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.754	1	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-15	2	58	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-6	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-7	5	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-14	5	56	IPR009057	Homeodomain-like
CDD	cd11660	1.05E-20	6	57	No hit	No description
SMART	SM00526	6.0E-13	117	182	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	5.44E-14	117	195	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.5E-13	119	187	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	20.221	119	187	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	9.8E-10	124	180	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGAPKQKWTS EEEVALKAGI KKYGIGKWST ILKDPEFSTV LRSRSNVDLK DKWRNLNCMA 60 NGLGSRHRAR APSKSNQLTT KRSEDTIASA MVVDKDTEVG VSSLAASSEI SHNASSKKKI 120 SRLDDVILEA ISKLKEPRGS GRPAITQYIE DNYSAPPDLE RNLASHLKIL TANGRLIKVK 180 HQYRITLKSI SSAGGEEPKL LVENGGNDSF EAENPVVLLK HDQIRSVQNR VQRSDYLLQE 240 YVHMXXXXLV RSDLHFLTEP SYLKKLVLLQ DTIVHKEKHA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099387.1	1e-113	telomere repeat-binding factor 1 isoform X3
Swissprot	Q8VWK4	5e-57	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A4D9B7C5	1e-113	A0A4D9B7C5_SALSN; Myb proto-oncogene protein, plant
STRING	Migut.H00343.1.p	1e-101	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5122	22	35

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]