PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100060960001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 326aa    MW: 37156.8 Da    PI: 4.7827
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100060960001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1886139356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++t +q++ Le+ Fe ++++  e++ +LA++lgL+ rq+ +WFqNrRa++k
  Ote100060960001|100060960001  86 KKRRLTMDQVQFLERSFEVENKLEPERKLQLANELGLQPRQIAIWFQNRRARYK 139
                                   56789************************************************9 PP
2HD-ZIP_I/II121.15.5e-3985176192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+ +qv++LE+sFe e+kLeperK +la+eLglqprq+a+WFqnrRAR+ktk+lE++ye+L+++y++lk++ + L 
  Ote100060960001|100060960001  85 EKKRRLTMDQVQFLERSFEVENKLEPERKLQLANELGLQPRQIAIWFQNRRARYKTKHLETEYESLHASYKSLKTDYDYLL 165
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   ke+e+L++e+ 
  Ote100060960001|100060960001 166 KENEKLKAEVL 176
                                   *******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1964141IPR009057Homeodomain-like
PROSITE profilePS5007117.37881141IPR001356Homeobox domain
SMARTSM003894.5E-1884145IPR001356Homeobox domain
CDDcd000868.15E-1886142No hitNo description
PfamPF000469.0E-1686139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-1888148IPR009057Homeodomain-like
PRINTSPR000311.7E-5112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5121137IPR000047Helix-turn-helix motif
PfamPF021831.3E-11141179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAGRELATAG GGALDLTKKM TNYAHDRPSD SVFASDPSNY FLGPRTMVSF GGAVRVSESG  60
NSFHQSFNPH ENVDEYLDDY FNQPEKKRRL TMDQVQFLER SFEVENKLEP ERKLQLANEL  120
GLQPRQIAIW FQNRRARYKT KHLETEYESL HASYKSLKTD YDYLLKENEK LKAEVLQLKH  180
NGLSQDLEHR YLGLSDTKEP SEATPKEAAA AANDDDMIST SQEYNVTGLT PENVEPTSAK  240
SDVTNEESPG LTDGTHPWLV ESGDSSHDFV PDQSILSHHR EEFLNEELLQ HAYIFPKFED  300
GYCHPHATTC GYGFAVEDHT FTFWSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852975.11e-100PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A4D9BRV61e-145A0A4D9BRV6_SALSN; Homeobox-leucine zipper protein
STRINGMigut.D01856.1.p1e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495